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Detailed information on CNT30583583


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M8S0|MBS1_ARATH, E-value = 8e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673979Echinochloa crusgalliSetaria viridis25.0642.5986.76204forward
CNT30687535Echinochloa crusgalliTriticum urartu9.0923.5793.2474forward
CNT30348261Echinochloa crusgalliEragrostis tef9.4626.5596.177forward
CNT30102244Echinochloa crusgalliOryza rufipogon15.4820.2696.03126forward

Expression of CNT30583583

Peptides detected in this lncRNA

>peptide 1 (52 aa)
YQTPNKAIPNSRYVCQQKKVNKQQIRAIVPGDPIVLNSTSIRRQHHSPATQN*

>peptide 2 (36 aa)
VSNTQQSNSQFTIRVPAKESKQATDSCHCSRRPNRP*

>peptide 3 (32 aa)
MTHVAAVTKSSSSLVVHRRPAAAAATGGRRRR*

>peptide 4 (83 aa)
MDLMSGAGVRQSGHASFAWPPLSCPSRSACPALPPPRFVVAASIFAAISFAVCFFGFALPVIVEPPPSPLSLPPQPPPPPRPC*

Sequence

>CNT30583583
GTATCAAACACCCAACAAAGCAATTCCCAATTCACGATACGTGTGCCAGCAAAAGAAAGTAAACAAGCAACAGATTCGTGCCATTGTTCCAGGAGACCCA
ATCGTCCTTAACAGTACTAGCATCCGTCGCCAGCATCACAGCCCAGCAACACAGAATTAAACGTGCCGACTTGCCGGCGACGATAATAAAACAAACAGGC
AGCGAAACCATAGCCACAGATTATAGTTAACAGGTCTATCACATCACATGACACATGTAGCAGCAGTAACGAAAAGCAGCAGCAGTCTAGTAGTACACCG
CAGGCCAGCTGCGGCAGCCGCCACCGGAGGGCGCCGGCGGCGGTAGTTTGACTGATTGATTGATTATAGATCGGGCCGGTGGATGGGACTGGAATTTCAA
GGAATTACCCCAGGCAAGCAAGCTACTTCTTGAGGCTGCCGCGGACGCCGGGCTTGGGCTTGGAGGAGGAGGTTCAGGAGCTTCTCCGGCTCGAAGGGGA
GCTTGGGGTGGCGCGCCTCGTGGTGGATCTGCATGGACTTGATGTCGGGCGCCGGGGTGCGGCAGAGCGGGCACGCCAGCTTCGCGTGGCCGCCCTTGTC
CTGCCCCAGCCGGTCCGCCTGCCCCGCCTTGCCGCCGCCGCGGTTCGTCGTCGCCGCGTCGATCTTCGCGGCGATCTCCTTCGCCGTGTGCTTCTTCGGC
TTCGCCTTGCCCGTCATCGTCGAACCGCCCCCCTCTCCTCTCTCTCTCCCCCCGCAGCCGCCGCCGCCGCCGCGACCTTGCTAACCCTACTTGCGTTTGG
GTTGTTCGTGGCGA