« Back to Gossypium raimondii search


Detailed information on CNT30608642


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FMH8|RD21B_ARATH, E-value = 3e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30711290Gossypium raimondiiGlycine max23.7712.4581.71164forward
CNT30287698Gossypium raimondiiTriticum aestivum13.0421.2885.5690forward
CNT3033018Gossypium raimondiiTheobroma cacao27.6821.9583.25191forward

Expression of CNT30608642

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSLRSSNLYHSLCHIRQQPHHGLVVSHIFR*

Sequence

>CNT30608642
CATTTAAGTTGCAGATAGGATAGTCATGAGGACAGCAGCTGTAGTGGTCGTCACAGCAAGCCTCAATTGCAATTCCACATTTGCCTGTTGCTGTATTGGC
TAGATTTCTTTCCATCCTGATATAACCTTCCTCTCCCCATTGATTACCCCATGAGTTCCTTACGATCCAGTAATCTTTACCATTCTCTGTGCCATATCCG
ACAGCAACCACACCATGGTCTAGTTGTGTCCCACATATTCCGTTAAAAATACCCTACATTAAAAGAACAGTAGAATACATTATTCAAACCCCATTTTCAA
AGACATTATTGCTTCGTGATCAATTAGTCACTCAGGCTTGACAAAGTCAAGAGTAATTAGCCACAAAGCATTCGATATTGTAATCCTTGGTTTCAAAAAG
TGACAAGCTGGTGACGAAAAACAACATCAACTAGAGAAGATCATCATTTCTAGGTTTCATTAAGTACGACCGAATGCGATATGGAGATCATGGGTGTTAA
TCTAAACATATGGTCTTTGCAATAACTAGTAATTTTGAAGGACATTATTCTTACTGATGCATACAACTGGAAAGCCCTGCCTCCAGCTTCAATGGCAACG
CTAACCGGTTGATTCGCAAGTGCCTTTTTCAATGCACCCTCATTATTTTGTGGAACATCTTCATAAGAGTCAATTGTAACAACCTTGGCA