Detailed information on CNT30364646


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 8e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691482Sorghum bicolorOryza sativa11.4852.2892.86126forward
CNT30671265Sorghum bicolorSetaria viridis5.5629.996.7261forward
CNT30177347Sorghum bicolorSecale cereale10.9322.7385.83120forward
CNT30286106Sorghum bicolorTriticum aestivum9.6535.187.74106forward
CNT30225885Sorghum bicolorHordeum vulgare8.5628.7590.4394forward
CNT30553532Sorghum bicolorOryza glaberrima15.0321.7483.64165forward
CNT30435636Sorghum bicolorAegilops tauschii24.4138.8480.97268forward
CNT30254575Sorghum bicolorAvena sativa26.5927.4289.38292forward
CNT30135452Sorghum bicolorLolium perenne26.8779.5183.73295forward
CNT30680825Sorghum bicolorTriticum urartu32.9771.2682.04362forward
CNT30345244Sorghum bicolorEragrostis tef14.363.0584.71157forward
CNT30358787Sorghum bicolorLactuca sativa7.5622.3185.5483forward
CNT30321993Sorghum bicolorAsparagus officinalis14.0337.4785.06154forward
CNT30149709Sorghum bicolorBrachypodium distachyon8.9332.6785.7198forward
CNT30100237Sorghum bicolorOryza rufipogon23.9516.4990.11263forward
CNT30592972Sorghum bicolorEragrostis curvula14.8544.995.09163forward

Expression of CNT30364646

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MTSAMMASTLASKSTVEARPEPTAVPLTMARPSFGWSSKNPCSMPAILNASAASTFLPSGATATEFWRPVMSPAM*

>peptide 2 (65 aa)
MILKRSVLSRCTLVFLRSVYLDLLCSCALPGAAQQSGSGSPFHSLRHSSSGYWVPTSSRTNRYSG*

>peptide 3 (29 aa)
MVPRSGRHGVTLALSSLAMASRISKRMPE*

Sequence

>CNT30364646
TGCGGGAAGAACACAACAACATTCACATGAACTTTAGCTACTAGTAGTACAAGGCAACGGTAAATATAGAGAGTATCTTCTGCTAGTCTGGTTGTAAAAA
CTTCACAATGATCTTGAAACGCTCTGTCTTGAGCCGCTGTACTTTGGTTTTTCTTCGATCTGTATACCTTGATCTTCTCTGCTCTTGCGCACTGCCAGGC
GCAGCTCAGCAGAGCGGCAGTGGCTCGCCGTTCCACTCCTTGAGGCACTCGAGCAGCGGGTACTGGGTGCCGACCTCCTCGCGCACGAACCGGTACAGCG
GGTAGGACCGGCACTCCTTGATCCTGTTGGGCACCAGAGGGTTGCCGCTCTCCACGGCGGCGCGCGCGGCCTCCACCTCCTTGGGCAGCGCGGCGCGGAC
CTGCTGCTCGAACTCGGCCACCTTGGCGAAGATGGACGTCTCCACGACGCGCTCGGCGTCGCCGTTGGCCAGCGCGTGCTCGATCAGCACCGCGCGGAGC
TTCTGCATCAGCGGGTAGTTGGGGCTGCACGGGTCGTCCGCGTACGCGAACACCGCCTCCCGGTCGATCGCCGTCTGCAGGTCCTTCTCGCAGAAGCGCG
CGTTGTGGAGCCCGCCCCTGGCGTTCAGGCTCAGCGACTTCTTGGCCACCTGCGTCACGCAGTTCTTCACCGCGGCCTTCACGTTCTCCTCGATGTGGCG
GAGATGACCTCGGCCATGATGGCGAGCACGTTGGCCTCAAAGAGCACGGTGGAGGCAAGGCCAGAGCCCACGGCCGTGCCGTTGACCATGGCGAGACCCT
CCTTTGGCTGGAGCTCGAAGAATCCGTGCTCAATGCCGGCGATCTTGAACGCCTCGGCGGCGTCCACCTTCCTGCCATCGGGCGCCACCGCGACGGAGTT
CTGGCGGCCCGTGATGAGTCCCGCGATGTAGGAGAGCGGCACGAGGTCGCCCGACGCGGTGATGGTGCCCCGGAGCGGCAGGCACGGCGTGACGTTGGCG
TTGAGCAGCTTGGCGATGGCCTCAAGGATCTCGAAGCGGATGCCGGAGTAGCCCTGGAGGAGGGTGTTGATGCGCACGAGCATCGCCGCGCGGGTGGC