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Detailed information on CNT30299998


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 5e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696274Triticum aestivumOryza sativa58.8261.1191.62597forward
CNT30554984Triticum aestivumOryza glaberrima58.8253.1191.62597forward
CNT30251114Triticum aestivumAvena sativa65.1263.2592.28661forward
CNT30665158Triticum aestivumTriticum dicoccoides88.9794.2698.23903forward
CNT30471514Triticum aestivumSaccharum spontaneum59.5171.8289.07604forward
CNT30129909Triticum aestivumCorymbia citriodora537488.66538forward
CNT30596906Triticum aestivumOryza meridionalis54.1956.1892.55550forward

Expression of CNT30299998

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MACTKKPNMENMARRPFLISFTLSSANASGSSARLGLPR*

>peptide 2 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAPAIACYSLALLRVS*

>peptide 3 (30 aa)
DFQKNIRRTSVFDIQKFRETKKLSRRTEMP*

>peptide 4 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 5 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

Sequence

>CNT30299998
TGGACTTCCAGAAAAATATTCGGAGAACTTCTGTATTTGACATTCAGAAGTTCAGAGAAACCAAGAAGTTAAGCAGAAGAACAGAGATGCCTTGATTAAT
CTGAGAAAATAGCCAGATATTACACAAACACCATCTTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGAC
TACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGGTTGAGCTGACCG
CGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCCAGGGGCCCCTTGCCG
GTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCCT
CGGCGAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCG
GGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCG
GCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGT
CGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGC
CTTCACCGGGGTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGCCCGCCATTGCGTGCTACTCGCTAGCTTTGCTTCGGGTGAGCTGAGGCTGG
CAGTGGGAGGCGCTG