CANTATAdb - search

Detailed information on CNT30696274

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30629403	Oryza sativa	Vigna unguiculata	49.33	66.94	86.1	482	forward
CNT30299998	Oryza sativa	Triticum aestivum	61.11	58.82	91.62	597	forward
CNT30554984	Oryza sativa	Oryza glaberrima	89.56	77.85	99.54	875	forward
CNT30251114	Oryza sativa	Avena sativa	61.62	57.61	89.2	602	forward
CNT30665158	Oryza sativa	Triticum dicoccoides	61.11	62.32	92.8	597	forward
CNT30471514	Oryza sativa	Saccharum spontaneum	61.72	71.7	90.88	603	forward
CNT3011490	Oryza sativa	Zea mays	61.82	67.41	90.4	604	forward
CNT30129909	Oryza sativa	Corymbia citriodora	55.27	74.28	88.52	540	forward
CNT30363113	Oryza sativa	Sorghum bicolor	54.86	54.42	89.55	536	forward
CNT30596906	Oryza sativa	Oryza meridionalis	57.42	57.3	97.15	561	forward
CNT30371011	Oryza sativa	Oryza glumipatula	56.7	85.23	99.64	554	forward
CNT30582730	Oryza sativa	Echinochloa crusgalli	62.85	38.76	88.6	614	forward

Expression of CNT30696274

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGLGLPR*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

Sequence

>CNT30696274
GAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAA
TCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCA
AAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGT
ACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACAT
GGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGCTCGGGTTGCCGAGG
TAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGC
AGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCA
CCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCC
GACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCA
CCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCG