« Back to Oryza rufipogon search


Detailed information on CNT30103478


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 7e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Oryza rufipogonOryza sativa79.8486.8100776forward
CNT30186748Oryza rufipogonSecale cereale40.7446.9893.18396forward
CNT30297962Oryza rufipogonTriticum aestivum47.3366.0990.87460forward
CNT30554896Oryza rufipogonOryza glaberrima88.2789.8499.42858forward
CNT30252168Oryza rufipogonAvena sativa47.4355.8189.8461forward
CNT30664228Oryza rufipogonTriticum dicoccoides48.1556.5291.03468forward
CNT30685463Oryza rufipogonTriticum urartu48.1552.5890.81468forward
CNT30371058Oryza rufipogonOryza glumipatula53.81100.3899.04523forward
CNT30108137Oryza rufipogonOryza longistaminata81.0799.8799.11788forward
CNT30117552Oryza rufipogonOryza nivara97.2299.1699.58945forward
CNT30604606Oryza rufipogonOryza punctata54.1263.3790.68526forward

Expression of CNT30103478

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVIFWDRGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 3 (63 aa)
PIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

Sequence

>CNT30103478
CCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTATACTATACATAGCCAGAAA
TGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTA
GTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAA
CCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGG
GGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCC
GCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCG
CCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGC
CCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGC
CGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAG
AGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAG