Detailed information on CNT30117552


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 6e-91

BLAST vs NONCODE:
NONBNAT005173, E-value = 5e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696223Oryza nivaraOryza sativa82.2787.799.87784forward
CNT30186748Oryza nivaraSecale cereale41.5546.9892.93396forward
CNT30297962Oryza nivaraTriticum aestivum48.2766.0990.65460forward
CNT30554896Oryza nivaraOryza glaberrima87.8387.6499.16837forward
CNT30252168Oryza nivaraAvena sativa48.3755.8189.59461forward
CNT30664228Oryza nivaraTriticum dicoccoides49.1156.5290.81468forward
CNT30685463Oryza nivaraTriticum urartu49.1152.5890.6468forward
CNT30371058Oryza nivaraOryza glumipatula54.0498.8599.03515forward
CNT30108137Oryza nivaraOryza longistaminata81.0197.8598.83772forward
CNT30103478Oryza nivaraOryza rufipogon99.1697.2299.58945forward
CNT30604606Oryza nivaraOryza punctata55.1963.3790.49526forward

Expression of CNT30117552

Peptides detected in this lncRNA

>peptide 1 (54 aa)
VLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIKITPRIST*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

Sequence

>CNT30117552
AGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTTTGGGATTGAGGGAGTA
TTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAAAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTG
CAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACG
AACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGG
CGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGC
CTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAACCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATC
ACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCG
GCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCG
CATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGAT
GCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTT