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Detailed information on CNT30696223


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186748Oryza sativaSecale cereale44.346.9893.18396forward
CNT30297962Oryza sativaTriticum aestivum51.4566.0990.87460forward
CNT30554896Oryza sativaOryza glaberrima74.7269.9599.7668forward
CNT30252168Oryza sativaAvena sativa51.5755.8189.8461forward
CNT30664228Oryza sativaTriticum dicoccoides52.3556.5291.03468forward
CNT30685463Oryza sativaTriticum urartu52.3552.5890.81468forward
CNT30371058Oryza sativaOryza glumipatula39.0466.99100349forward
CNT30108137Oryza sativaOryza longistaminata67.4576.4399.5603forward
CNT30103478Oryza sativaOryza rufipogon81.9975.41100733forward
CNT30117552Oryza sativaOryza nivara81.9976.9299.86733forward
CNT30604606Oryza sativaOryza punctata58.8463.3790.68526forward

Expression of CNT30696223

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 2 (33 aa)
LVGKRIKSLLQKHHLLLHLLSVHNTNSIIISSH*

Sequence

>CNT30696223
ATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCAC
TAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTG
CCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGA
GCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAG
CGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAG
TCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACG
CCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGA
GGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGGAGTTGGAGATGGC
GCGGGAGTTTAAATAGCGCGGGAAGTGAGGGGGGATCGAGTCCTTATCTTGGGAAATCTAAAGGCGGCTCGCGATTGGCGCTCGCGCGTGGGGC