« Back to Triticum aestivum search


Detailed information on CNT30289813


BLAST search results

BLAST vs Swiss-Prot:
sp|P11383|RBL_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONMEST005601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182914Triticum aestivumSecale cereale78.3283.9299.291550forward
CNT30225846Triticum aestivumHordeum vulgare20.1135.197.99398forward
CNT30554212Triticum aestivumOryza glaberrima72.1637.8693.211428forward
CNT30434683Triticum aestivumAegilops tauschii22.7475.6399.33450forward
CNT30258658Triticum aestivumAvena sativa36.3899.8695.97720forward
CNT3017995Triticum aestivumZea mays72.0692.393.061426forward

Expression of CNT30289813

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDKLHNRSIGCLPQQQARCDSIVLCNDQDW*

Sequence

>CNT30289813
AGCCGAGTTTAATTGCAATCAATTAGAAGAATAAAGAAGAATTACTGCATTTCATAACTTATTTTTTTCTCTTTTTATTTCGTTTCTTTTTTATTTATAC
CTTCTTTATCTTTAGTTTTATCTAGTTAATCAATAGTATCTACCGGCTCGAACTCGAATTTGATCGCCTTCCATACTTCACAAGCTGCGGCTAGTTCAGG
ACTCCATTTGCAAGCTGCTCGGATAATTTCATTACCTTCGCGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTA
GCTGCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCGTCCCCAAAGATTTCGGTCAGAGCTGGCATAT
GCCAAACATGAATACCACCTGAAGCTACCGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCGTCCCCAAAGATTTC
GGTCAGAGCTGGCATATGCCAAACATGAATACCACCTGAAGCTACCGGTATAACACCTGGCATGGATACCCAGTCCTGAGTGAAAAAGATACCGCGAGCA
CGATCTTTTTCAATAAAATCATCGCGCAATAAATCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCGGAGTGGATAT
GATCTCCCCCAGACATACGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCACGGTGAATGTG
AAGAAGTAGGCCATTGTCGCGGCAATAATGAGCCAAAGTAGTATTTGCGGTGAATCCCCCAGTTAAGTAGTCATGCATTACAATAGGAACCCCTAATTCT
CTTGCAAATACAGCTCTCTTAATCATTTCTTCACATGTACCCGCAGTCGCTTTCAAGTAATGCCCCTTGATTTCACCGGTTTCGGCCTGTGATTTATAAA
TAGCTTCGGCACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACA
CTCATAACACGCTCTACCATAATTTTTTGCGGATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACGACCATACTTGTTCAACTTATCTCTT
TCAACTTGGATACCATGAGGCGGGCCTTGGAAAGTTTTTGAATAAGTAGGGGGAATTCGTAGATCCTCCAAACGTAGAGCACGTAGGGCTTTGAAACCAA
ATACGTTACCTACAATGGAAGTAAACATGTTAGTAACGGAACCCTCTTCAAATAGGTCTAATGGATAAGCTACATAACAGATCCATTGGCTGTCTTCCCC
AGCAACAGGCTCGATGTGATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTTTCCATGTACCAGTAGAAGATTCGGCA
GCTACTGCAGCCCCTGCTTCTTCGGGCGGAACCCCAGGCTGAGGACTTACTCGGAATGCTGCCAAGATATCAGTATCCTTAGTTTCATACTCTGGGGTGT
AGTAAGTCAATTTATAATCTTTAACACCAGCTTTAAATCCAACACCTGCTTTAGTTTCTGTTTGTGGTGACATAAGTCCCTCCCTATAACTCTTGAATTA
AGAATTCTCACAATAACAGGGTCTACTCGATGTTAATTAGGCGTAAATGAAACTTTAGCAAAAATCTCGTAAAACAAAAAGGATATTCAATTAATATAAT
ATCAACTCATTAAAGAAAATTGAGGGCATGCTTAGGTTAATGAATATGTTTCATTCATATATAATGCGTACACCCTGTGTAGGTTCTATCCTATAGGAAT
TCCACTATAGGAATTCGATAGGAATTGAGTTGTTGTTATGGTAAGTTAACACGGTTCGTTATTAAACCATGGATTTGAT