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Detailed information on CNT30225846


BLAST search results

BLAST vs Swiss-Prot:
sp|P05698|RBL_HORVU, E-value = 7e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019929Hordeum vulgareCitrullus lanatus15.1739.6388.37172forward
CNT30182914Hordeum vulgareSecale cereale35.121.5598.24398forward
CNT30289813Hordeum vulgareTriticum aestivum35.120.1197.99398forward
CNT30145435Hordeum vulgareMedicago truncatula10.4932.8789.08119forward
CNT30258658Hordeum vulgareAvena sativa27.5143.2794.55312forward
CNT30265852Hordeum vulgareBrassica rapa9.0823.5785.44103forward
CNT30681897Hordeum vulgareTriticum urartu23.8128.6696.3270forward
CNT30434475Hordeum vulgarePapaver somniferum15.1744.7987.21172forward
CNT30323704Hordeum vulgareAsparagus officinalis24.0791.9289.74273forward
CNT30121217Hordeum vulgareCitrus clementina24.2530.6684.73275forward
CNT30100001Hordeum vulgareOryza rufipogon10.8547.6795.93123forward

Expression of CNT30225846

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVVSLRFHHLWTVILVQLISFNLDTMRRALESF*

>peptide 2 (30 aa)
MPLDFTGTPNSLANTALLIISSHVPAVAFK*

Sequence

>CNT30225846
TTCTAACTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCAGACAAACGCAATTCTTTAGCTAATCCACGGAAATGCATACCATGATTTTTCTGT
CTATCAATAACTGCATGCATTGCACGCCAAAGTAGTATTTGCGGTGAATCCCCCGGTTAAGTAGTCATGCATTACAATAGGAACCCCTAATTCTCTCGCA
AATACAGCTCTCTTAATCATTTCTTCACATGTACCCGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACCGGAACCCCTAATTCTCTCGCAAATACAGC
TCTCTTAATCATTTCTTCACATGTACCCGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACCGGTTTCGGCCTGTGATTTATAAATAGCTTCGGCACAA
AAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGACGGTCATACTTGTTCAACTTATCTCTTTCAACTTGGAT
ACCATGAGGCGGGCCTTGGAAAGTTTTTGAATAAGTAGGGGGAATTCGTAGATCCACCAAACGTAGAGCACGTAGGGCTTTGAACCCAAATACGTTACCC
ACAATGGAACTAAACATGTTAGTAACGGAACCCTCCTCAAATAGGTCTAATGGATTAGCTACATAACAGATCCATTGGCTGTCTTCCCCGACAATAGGCT
CGATGTGATAGCATCGTCCTTTGTAACGATCAAGACTGTTTCATACTCTGGGGTGTAGTAAGTCAATTTATAATCTTTAACACCAGCTTGAAATCCAACA
CCTGCTTTAGTTTCTGTTTGTGGTGACATAAGTCCCTCCCTACAACTCTTGAATTAAGAATTCTCAGAATAACAGAGTCTACTCGATGTTAATTAGGCGT
CAATGAAACTTCAGCAAAAATCTCGTAAAACAAAAGGATATTCAATTAATATAATATCAACTCATTAAAGAAAATTGAGGGCATGCTTAGGTTAATGAAT
ATGTTTCATTCATATATAATGCGTACACCCTGTGTATGTTCTATCCTATAGGAATTCCACTATAGGAATTCGATAGGAATTGAGTTGTTGTTATGGTAAG
TTAACACGGTTCGTTATTAAACCATGGATTTGAT