CANTATAdb - search

Detailed information on CNT30258658

BLAST search results

BLAST vs Swiss-Prot:
sp|P48684|RBL_AVESA, E-value = 3e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019929	Avena sativa	Citrullus lanatus	32.04	53.23	91.34	231	forward
CNT30182914	Avena sativa	Secale cereale	99.86	38.98	96.39	720	forward
CNT30289813	Avena sativa	Triticum aestivum	99.86	36.38	95.97	720	forward
CNT30225846	Avena sativa	Hordeum vulgare	43.27	27.51	94.55	312	forward
CNT30360303	Avena sativa	Lactuca sativa	43.97	61.08	91.8	317	forward
CNT30434475	Avena sativa	Papaver somniferum	42.02	78.91	89.44	303	forward

Expression of CNT30258658

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDKLHNRSIGCLPQQQARCDSIVLCNDQDW*

>peptide 2 (39 aa)
DHTCSTYLFQLGYHEADLGKFLYKQGEFVDPPDVEHVGL*

Sequence

>CNT30258658
CGACCATACTTGTTCAACTTATCTCTTTCAACTTGGATACCATGAGGCGGACCTTGGAAAGTTTTTGTATAAGCAGGGGGAATTCGTAGATCCTCCAGAC
GTAGAGCACGTAGGGCTTTGAAACCAAATACGTTACCCACAATGGAAGTAAACATGTTAGTAACGGAACCCTCTTCAAATAGGTCTAATGGATAAGCTAC
ATAACAGATCCATTGGTTGTCTTCCCCAGCAACAGGCTCGATGTGATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGTCCATCAGCCCAAACAGTT
GTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCAGCCCCTGCTTCTTCCGGCGGAACCCCAGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAG
TATCCTTGGTTTCATACTCCGGGGTGTAGTAAGTCAATTTATAATCTTTAACACCAGCTTGAAATCCAACACTTGCTTTAGTTTCTGTTTGTGGTGACAT
AAGTCCCTCCCTACAACTCTTGAATTAAGAATTCTCACAATAACAGGGTCTACTCGATGTGAATTAGACGTCAATGCAACTTTAGCAAAAATTTCGTAAA
ACAAAAAGGATATTCAATTAATATAATATCAACTCATTAAAGAAAATTGAGGGCATACTTAAATTAATGAATATTTTGCATTCATATATAATGTGTACAC
CCTGTGTATTTTCTATCCTAC