CANTATAdb - search

Detailed information on CNT3017995

BLAST search results

BLAST vs Swiss-Prot:
sp|Q31655|RBL_AJUCH, E-value = 0.0

BLAST vs NONCODE:
NONMEST005601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690840	Zea mays	Oryza sativa	82.98	27.75	95.79	1282	forward
CNT3019929	Zea mays	Citrullus lanatus	15.86	56.45	90.61	245	forward
CNT30629265	Zea mays	Vigna unguiculata	30.23	41.25	88.01	467	forward
CNT30201084	Zea mays	Pisum sativum	62.98	44.31	86.43	973	forward
CNT30182914	Zea mays	Secale cereale	92.23	77.15	92.77	1425	forward
CNT30289813	Zea mays	Triticum aestivum	92.3	72.06	93.06	1426	forward
CNT30565170	Zea mays	Actinidia chinensis	67.44	91.24	88.58	1042	forward
CNT3089355	Zea mays	Vigna radiata	28.03	72.65	82.68	433	forward
CNT30541452	Zea mays	Brassica napus	73.27	67.91	86.84	1132	forward
CNT30554212	Zea mays	Oryza glaberrima	98.9	40.51	93.78	1528	forward
CNT30146680	Zea mays	Medicago truncatula	20.71	25.54	87.81	320	forward
CNT30258531	Zea mays	Avena sativa	38.38	99.5	95.11	593	forward
CNT3060115	Zea mays	Arabidopsis lyrata	51.78	33.74	86.25	800	forward
CNT30682029	Zea mays	Triticum urartu	58.32	85.4	96.89	901	forward
CNT30480921	Zea mays	Chara braunii	14.76	30	82.02	228	forward
CNT30434475	Zea mays	Papaver somniferum	20.13	80.99	89.39	311	forward
CNT30323704	Zea mays	Asparagus officinalis	19.03	98.99	92.18	294	forward
CNT30121217	Zea mays	Citrus clementina	53.79	92.64	87.48	831	forward

Expression of CNT3017995

Peptides detected in this lncRNA

>peptide 1 (52 aa)
AALIISLPSRARSRPSLRACTQASKATRLAAAPVLSEKDTARTIFFNKIIAQ*

>peptide 2 (30 aa)
MDKLHNRYIDLGPQERARCDSIVLCNDQDW*

>peptide 3 (38 aa)
MYLQSHSSNALDFTSFGLCFINCFGTKDKTVSPAHKWL*

Sequence

>CNT3017995
GCTGCTTTGATAATTTCATTACCTTCACGAGCAAGATCGCGCCCTTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACACGATTAGCTGCTGCACCAG
TCCTGAGTGAAAAAGATACCGCGAGAACGATCTTTTTCAATAAAATCATCGCGCAATAAATCAACAAAACCTAAAGTTATTTCGCGTTCCCCTTCTAACT
TACCTACTACTGTACCGGAGTGGATATGATCTCCCCCCGACATACGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAAT
AACTGCATGCATTGCTCGGTGAATGTGAAGAAGTAGGCCGTTGTCGCGGCAATAATGAGACAAAGTAGTATTTGCGGTGAATCCTCCTGTTAAGTAGTCA
TGCATTACAATAGGAACCCCTAATTCCCTTGCAAATACAGCTCTCTTAATCATTTCTTCGCATGTACCTGCAGTCGCATTCAAGTAATGCCCTTGATTTC
ACCAGTTTCGGCTTGTGCTTTATAAATTGCTTCGGCACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTG
GTAAAATCAAGTCCACCGCGTAGACACTCATAACACGCTCTACCGTAATTTTTTGCGGATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGAC
GACCGTACTTGTTCAACTTATCCCTTTCAACTTGGATACCGTGAGGCGGACCTTGGAAAGTTTTTGAATAAGCAGGGGGAATTCGTAGATCCTCCAAACG
TAGAGCGCGTAAGGCTTTGAAACCAAATACGTTACCCACAATGGAAGTAAACATGTTAGTAACAGAACCCTCTTCAAATAGGTCTAATGGATAAGCTACA
TAACAGATATATTGATCTGGGTCCCCAGGAACGGGCTCGATGTGATAGCATCGTCCTTTGTAACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTG
TCCATGTACCAGTAGAAGATTCCGCAGCTACTGCAGCTCCTGCTTCTTCAGGCGGAACCCCGAGCTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGT
ATCCTTGGTTTCGTACTCCGGGGTGTAGTAAGTCAATTTATAATCCTTAACACCAGCTTTAAATCCAACACTTGCTTTAGTTTCTGTTTGTGGTGACATA
AGTCCCTCCCTACAACTCATGAATTAAGAATTCTCACAACGACAGGGTCTACTCGATATGGATTAGGCGTAAATGAAACCTTTGCAAAAATCTAAAAAAA
AAGATATTTAATTAATATCAACTCATTAAATAAAAAAAGGAGTATGCTTAAGTTAATGAATATGTTTCATTCATATATAATGTGTACACCCTGTGTACGT
TCTATCCTATAGGAATTTTACTATAGGAATTCGATAGGAAGGAATTCGATAGGAATTGAGTTGTTGTTATGGTAAGTTAACACGGTTCGTTATTAAACCG
TGGATTTGATTCACCAAATCCATCATTATTGTATACTCTTTGATA