CANTATAdb - search

Detailed information on CNT30182914

BLAST search results

BLAST vs Swiss-Prot:
sp|P05698|RBL_HORVU, E-value = 0.0

BLAST vs NONCODE:
NONMEST005601, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30629265	Secale cereale	Vigna unguiculata	25.77	42.05	87.61	476	forward
CNT30289813	Secale cereale	Triticum aestivum	83.92	78.32	99.29	1550	forward
CNT30225846	Secale cereale	Hordeum vulgare	21.55	35.1	98.24	398	forward
CNT30565170	Secale cereale	Actinidia chinensis	56.74	91.77	88.07	1048	forward
CNT30554212	Secale cereale	Oryza glaberrima	77.31	37.86	93.07	1428	forward
CNT30258658	Secale cereale	Avena sativa	38.98	99.86	96.39	720	forward
CNT30265852	Secale cereale	Brassica rapa	5.58	23.57	85.44	103	forward
CNT3017995	Secale cereale	Zea mays	77.15	92.23	92.77	1425	forward

Expression of CNT30182914

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNNHSMQNFMYDSGRSLGSDIRYELVHRLLKPLD*

>peptide 2 (38 aa)
SETIKRSLYYLEKRVGVGSTNETKKFLIGLYHSEPSPY*

>peptide 3 (30 aa)
MDKLHNRSIGCLPQQQARCDSIVLCNDQDW*

Sequence

>CNT30182914
AGTGAGACTATCAAAAGATCTCTCTATTATTTAGAGAAAAGAGTTGGCGTGGGTTCTACCAACGAAACGAAGAAGTTTTTGATTGGTCTTTATCATTCGG
AACCCTCTCCGTATTAGTAAGAAAAACACACCCAGACTCTGACTTCAATGGTGGGAACAACCTCAGCACTCCGGCGTGAACATGAACAATCATTCTATGC
AAAATTTCATGTATGATAGTGGTCGATCCCTCGGGAGTGACATTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCTGCTGCACCAGGT
GCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGTAATACAGAATCGTCCCCAAAGATTTCGGTCAGAGCTGGCATATGCCAAACATGAATAC
CACCTGAAGCTACCGGTATAACACCTGGCATGGATACCCAGTCCTGAGTGAAAAAGATACCGCGAGCACGATCTTTTTCAATAAAATCATCGCGCAATAA
ATCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAACTTACCTACTACTGTACCGGAGTGGATATGATCTCCCCCAGACATACGCAATGCTTTAGCT
AATACACGGAAATGCATACCATGGTTTTTCTGTCTATCAATAATTGCATGCATTGCACGGTGAATGTGAAGAAGTAGGCCATTGTCGCGGCAATAATGAG
CCAAAGTAGTATTTGCGGTGAATCCCCCAGTTAAGTAGTCATGCATTACAATAGGAACCCCTAATTCTCTTGCAAATACAGCTCTCTTAATCATTTCTTC
ACATGTACCCGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACCGGTTTCGGCCTGTGATTTATAAATAGCTTCGGCACAAAAGACAAAACGGTCTCTC
CAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTAAAATCAAGTCCACCAAGTAGACACTCATAACACGCTCTACCATAATTTTTTGCGG
ATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACGACCATACTTGTTCAACTTATCTCTTTCAACTTGGATACCATGAGGCGGGCCTTGGAA
AGTTTTTGAATAAGTAGGGGGAATTCGTAGATCCTCCAAACATAGAGCACGTAGGGCTTTGAAACCAAATACGTTACCCACAATGGAAGTAAACATGTTA
GTAACGGAACCCTCTTCAAATAGGTCTAATGGATAAGCTACATAACAGATCCATTGGTTGTCTTCCCCAGCAACAGGCTCGATGTGATAGCATCGTCCTT
TGTAACGATCAAGACTGGTAAGTCCATCAGTCCAAACAGTTGTCCATGTACCAGTAGAAGATTCGGCAGCTACTGCAGCCCCTGCTTCTTCGGGCGGAAC
CCCAGGCTGAGGACTTACTCGGAATGCTGCCAAGATATCAGTATCCTTAGTTTCATACTCTGGGGTGTAGTAAGTCAATTTAGAATCTTTAACACCAGCT
TGAAATCCAACACCTGCTTTAGTTTCTGTTTGTGGTGACATAAGTCCCTCCCTATAACTCTTGAATTAAGAATTCTCACAATAACAGGGTCTACTCGATG
TTAATTAGGCGTAAATGAAACTTTAGCAAAAATCTCGTAAAACAAAAAGGATATTCAATTAATATAATATCAACTCATTAAAGAAAATTGAGGGCATGCT
TAGGTTAATGAATATGTTTCATTCATATATAATGCGTACACCCTGTGTATGTTCTATCCTATAGGAATTCCACTATAGGAATTCGATAGGAATTGAGTTG
TTGTTATGGTAAGTTAACACGGTTCGTTATTAAACCATGGATTTGAT