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Detailed information on CNT30434683


BLAST search results

BLAST vs Swiss-Prot:
sp|P11383|RBL_WHEAT, E-value = 2e-136

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Aegilops tauschiiOryza sativa75.639.7496.22450forward
CNT30181337Aegilops tauschiiSecale cereale75.6320.9299.33450forward
CNT30289813Aegilops tauschiiTriticum aestivum75.6322.7499.33450forward
CNT30541452Aegilops tauschiiBrassica napus75.2926.8785.49448forward
CNT30146680Aegilops tauschiiMedicago truncatula52.6124.9885.62313forward
CNT30257373Aegilops tauschiiAvena sativa75.6367.7797.56450forward
CNT3060115Aegilops tauschiiArabidopsis lyrata75.6318.9885.33450forward
CNT30687498Aegilops tauschiiTriticum urartu75.6333.1499.33450forward
CNT3058691Aegilops tauschiiAmborella trichopoda55.4673.8386.67330forward

Expression of CNT30434683

Peptides detected in this lncRNA

>peptide 1 (33 aa)
AFHTSQAAASSGLHLQAARIISLPSRARSRPSL*

Sequence

>CNT30434683
GCCTTCCATACTTCACAAGCTGCGGCTAGTTCAGGACTCCATTTGCAAGCTGCTCGGATAATTTCATTACCTTCGCGAGCAAGATCGCGCCCTTCGTTAT
GAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCTGCTGCACCAGAATCGTCCCCAAAGATTTCGGTCAGAGCTGGCATATGCCAAACATGAATACC
ACCTGAAGCTACCGGTATAACACCTGGCATGGATACCCAGTCCTGAGTGAAAAAGATACCGCGAGCACGATCTTTTTCAATAAAATCATCGCGCAATAAA
TCAACAAAACCTAAAGTCATTTCGCGTTCCCCTTCTAACTTACCTACTACTTTACCGGAGTGGATATGATCTCCCCCAGACATACGCAATGCTTTAGCTA
ATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGTATTGCACGGTGAATGTGAAGAAGTAGGCCATTGTCGCGGCAATAATGAGC
CAAAGTAGTATTTGCGGTGAATCCCCCAGTTAAGTAGTCATGCATTACAATAGGAACCCCTAATTCTCTTGCAAATATAGCTCTCTTAATCATTT