Detailed information on CNT30259100


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631202Brassica rapaVigna unguiculata51.1479.6679.74380forward
CNT30708359Brassica rapaGlycine max42.436.6380.95315forward
CNT3085597Brassica rapaVigna radiata43.4723.4182.35323forward
CNT30543418Brassica rapaBrassica napus46.9746.41100349forward
CNT30233182Brassica rapaBrassica oleracea58.1464.5799.31432forward
CNT3073350Brassica rapaBrassica juncea73.8910099.45549forward
CNT30621314Brassica rapaCajanus cajan42.6625.1482.02317forward
CNT30118713Brassica rapaCitrus clementina43.253.3281321forward

Expression of CNT30259100

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MIISVELEAGQDIVVDGIRQMIKKYCLPIDPGLYQSCNLLCSANPIKAISRTKSV*

>peptide 2 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 3 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDCRIQENGKPT*

>peptide 4 (36 aa)
MKPPVPSGSERPSGSNPKSPGKLQNHNNSPVKNRSL*

Sequence

>CNT30259100
TTTAAGCATTACTTGTAAATAATTCCATAACATTCTTTTAAATATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGT
TCTTTATGGCCATTATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTGTAG
GATACAAGAGAATGGGAAACCAACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGG
GATCCGCCAAATGATCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCG
AGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCA
GACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCAAACCTCCCGTTGATGATCTCTCCGTAGGCTAGCCATCTCGGCTC
GATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCGAAGTCGCCAGGTAAGCTTCAGAATCACAACAACTCTCCAGTTAAGAAT
CGTTCTCTATAAACTCTACACGTCTTGAAGCTTTAAAAAAATC