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Detailed information on CNT30233182


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073350Brassica oleraceaBrassica juncea50.2261.299.4336forward
CNT30259100Brassica oleraceaBrassica rapa64.5758.1499.31432forward
CNT30217954Brassica oleraceaKalanchoe fedtschenkoi17.3432.2281.9116forward

Expression of CNT30233182

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDFRIQENGKPT*

>peptide 2 (55 aa)
MIISVELEAGQDIVVDGIRQMIKKYCLPIDPGLYQSCNLLCSAKPIKAISRTKSV*

Sequence

>CNT30233182
TTCCATAACATTCTTTTAAATATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATGGCCATTATTTCTTA
CAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTTTAGGATACAAGAGAATGGGAAACCA
ACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATCCGCCAAATGATCAAGAAG
TATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCAGCAAAACCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGT
CTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAGTTGAGGCAGCCTTAACAACCAAGGAAACCTTCCTCTGTGATACGGACACAGCTGGTTTTGCGCCGAA
TATCTGTCTAGCAGTCTGAACAGAGGAAGTAAGTGAAGAAGACACAAGCCCTTGTGCTGCCATTCTTTGCTTAAACTCTTCTCTTCAGTCACCAAGAGAC
GATGATTATTGAATAATAGTCTGCAGGGAACCTAGTGTTAAGAGTAGAAGGAACAAGGTCCATTAGAAC