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Detailed information on CNT30233657


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543414Brassica oleraceaBrassica napus53.6410098.93280forward
CNT30259035Brassica oleraceaBrassica rapa88.710099.14463forward

Expression of CNT30233657

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAIISYKRRICLHRVLQHKETDGTKRNKQDFRIQENGKPT*

>peptide 2 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 3 (45 aa)
MIISVELENKECVRVCPVAVCPCRWNHTGLEPGKSSVCRNQTGLS*

Sequence

>CNT30233657
TTCCATAACATTCTTTTAAATATGTTAACTGAGTTTCTTGGTTATTTCTAAATACCAACCATTAATCCTAGAAGTTGTTCTTTATGGCCATTATTTCTTA
CAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAACTGATGGTACCAAGAGAAACAAACAAGATTTTAGGATACAAGAGAATGGGAAACCA
ACATAAAACACCATGAGATGAATACGATATGATCATCTCAGTGGAACTTGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGG
TGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAAC
ATAGCGAACCTCCCGTTGATGATCTCTCCGTAGGCCAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATC
CAAAGTCGCCAGGTAAGCTTCA