« Back to Populus trichocarpa search


Detailed information on CNT3025883


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 6e-142

BLAST vs NONCODE:
NONPOPT000587, E-value = 4e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30158121Populus trichocarpaPistacia vera32.3258.0888.15363forward
CNT30225130Populus trichocarpaHordeum vulgare25.8268.7280290forward
CNT30662024Populus trichocarpaTriticum dicoccoides33.5774.2184.08377forward
CNT3013982Populus trichocarpaZea mays20.2178.2883.7227forward
CNT30650534Populus trichocarpaRosa chinensis34.2841.3187.79385forward
CNT30174554Populus trichocarpaVigna angularis40.0762.6783.78450forward

Expression of CNT3025883

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAQRHILRGLIGGITKHMALVTSTNLLWPLGKVTVDTLGNIRALLLNVNQDFALVSIKTNI

>peptide 2 (83 aa)
MSVCGCLQEPIATPLEIQVDGHHSRPKVKVLLHNLKDLLVRNFSSAIGDLHNAPTSKTICYDALGSLPNNVSTTSIHLSWVLP*

>peptide 3 (33 aa)
MLSGDENSVDTDRDHCTVVIVVFNSNLRLAIRS*

>peptide 4 (52 aa)
RTHYYIFAAALQLPRASLTGICYFHCRKFNQNYHTFSHHRHWGKKRRKKKPK*

Sequence

>CNT3025883
CAAGAACACATTACTACATTTTTGCTGCTGCTCTACAGCTACCTCGTGCAAGCTTAACAGGCATTTGTTACTTCCATTGCCGTAAATTCAACCAAAATTA
TCACACTTTTTCACACCACCGACACTGGGGAAAAAAAAGACGGAAAAAAAAACCCAAATAGTAAAAGAAAGGAAAATGAATAGGGAGGGTATCGTAGTGT
AGACCATGGCAGATTGCTATTGATTATAGACCAGCAGCAAGAAAACAAGTCAAATTATTCATCAAGGACCAATAAAACAGGCATCGAACTAAAGGGATAT
TATAAATCACTCAAGCTTGGGGCTTCTCCCATTTGAGGGGCTTGACAACCTCCCAGGTGAAGTCTGGGTCATCCCTTCCAAAATGTCCGTATGCGGCTGT
CTTCAAGAACCTATTGCCACCCCTCTTGAGATCCAGGTTGATGGTCATCATTCCAGGCCTAAAGTCAAAGTTCTCCTTCACAATCTTAAGGATCTCCTTG
TCAGGAATTTTTCCAGTGCCATAGGAGACTTGCACAATGCACCTACGAGCAAGACCATTTGCTACGATGCTCTTGGCAGCCTGCCTAACAATGTAAGCAC
CACTTCTATCCACCTTAGTTGGGTCCTTCCCTGAGAAAGCACCACCACCATGGGCTCCCCAGCCACCGTAGGTGGAAGATAGTTTTCTCATCAAGGTACT
TCTCAGGGATGACAGGCTTAATGACATGCTCCTTTAGATCAGCAGCAATTTCATCATTTGTGACAGTCTCATCATGCTGAGTGGAGATGAGAACAGTGTG
GACACGGACAGGGACCATTGCACCGTTGTCATTGTAGTATTCAACAGTAACCTGCGTCTTGCCATCAGGTCTTAGCCAAGGGCAGGTGCCATTCTTCCTA
ACTTCAGTGAGGCGAGCCCCGAGCTTGGTGGCAAGTACATGGCTCAAAGGCATATACTCAGGGGTCTCATCGGTGGCATAACCAAACATATGGCCCTGGT
CACCAGCACCAATCTCCTCTGGCCGCTTGGTAAAGTGACCGTGGACACCCTGGGCAATATCAGGGCTCTGCTGCTCAATGTTAACCAAGACTTTGCACTT
GTCAGCATCAAGACCAACATCAT