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Detailed information on CNT30225130


BLAST search results

BLAST vs Swiss-Prot:
sp|A6XMY9|METK1_TRIMO, E-value = 1e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674395Hordeum vulgareSetaria viridis58.2932.289.43246forward
CNT30521128Hordeum vulgareSetaria italica68.2539.3486.11288forward
CNT30549907Hordeum vulgareIpomoea triloba32.9425.8880.58139forward
CNT30515028Hordeum vulgareJuglans regia67.7733.6982.52286forward
CNT30374815Hordeum vulgareArabidopsis thaliana65.8867.3179.86278forward
CNT30266655Hordeum vulgareChenopodium quinoa24.419.1687.38103forward
CNT30381524Hordeum vulgareManihot esculenta43.8422.3783.24185forward
CNT30712018Hordeum vulgareGlycine max60.1947.8379.92254forward
CNT30188757Hordeum vulgareSecale cereale60.958.0193.39257forward
CNT3082721Hordeum vulgareBrassica juncea26.7839.184.07113forward
CNT30471855Hordeum vulgareSaccharum spontaneum38.1517.586.34161forward
CNT3013982Hordeum vulgareZea mays40.0558.2888.17169forward
CNT30650534Hordeum vulgareRosa chinensis69.9131.6581.02295forward
CNT30626924Hordeum vulgareDaucus carota53.0817.7683.04224forward
CNT30363950Hordeum vulgareSorghum bicolor58.2921.2390.65246forward
CNT3025883Hordeum vulgarePopulus trichocarpa68.7225.8280290forward
CNT30174546Hordeum vulgareVigna angularis64.2235.4281.92271forward
CNT30557997Hordeum vulgarePanicum hallii21.0918.0591.0189forward

Expression of CNT30225130

Peptides detected in this lncRNA

>peptide 1 (73 aa)
WKMVFSSRYFPGITGLMTCSLRSAAISSLVTVSSCWVEMRTVCSDLIVGDGLIMLGGDEDGVHTNGHHGTTLV*

>peptide 2 (82 aa)
MRTVCTRTGTMAPPSFRYSMVTWVFPSGLSQAQVPFLRTSVRRAPSLVASTWLRGISSGVSSVAYPNMMPWSPAPTSSGRLVK

>peptide 3 (49 aa)
VEDGVFIEVLPGNHRLDDVLLEVRGDLIVGDGLVMLGGDEDGLQRSHRW*

Sequence

>CNT30225130
GTGGAAGATGGTGTTTTCATCGAGGTACTTCCCGGGAATCACCGGCTTGATGACGTGCTCCTTGAGGTCCGCGGCGATCTCATCGTTGGTGACGGTCTCG
TCATGCTGGGTGGAGATGAGGACGGTCTGCAGCGATCTCATCGTTGGTGACGGTCTCATCATGCTGGGTGGAGATGAGGACGGTGTGCACACGAACGGGC
ACCATGGCACCACCCTCGTTTAGGTACTCAATGGTGACCTGGGTCTTTCCATCAGGCCTGAGCCAGGCGCAGGTGCCGTTCTTGCGGACCTCAGTGAGGC
GAGCTCCAAGCTTGGTGGCGAGCACGTGGCTGAGGGGCATCAGCTCAGGGGTCTCGTCGGTGGCGTACCCGAACATGATGCCCTGGTCACCAGCACCGAC
CTCTTCTGGACGCTTGGTGAAG