Detailed information on CNT30242796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636813Avena sativaCapsicum annuum30.417.3484125forward
CNT30286106Avena sativaTriticum aestivum71.0596.6984.93292forward
CNT30568715Avena sativaActinidia chinensis34.7929.381.82143forward
CNT3037983Avena sativaCucumis melo54.0131.6281.08222forward
CNT30113881Avena sativaFicus carica45.7417.581.91188forward
CNT3040158Avena sativaMarchantia polymorpha34.0618.2383.57140forward

Expression of CNT30242796

Peptides detected in this lncRNA

>peptide 1 (74 aa)
VVGAARVICIGEHGLTVDRQEQVLLAEACVVQIAIVIGAQGLPCHRLHTVLDSILDILLKVAQIDSLAQRNHEC*

>peptide 2 (63 aa)
MNVEDMSFRMSMASAVFLEEMRPRELTSWLCCSALCTWLVTGLPKNWSSEQYEAMAISAPLKP*

>peptide 3 (28 aa)
MVSHRVAQELELRAVRGHGNLSTLEAVVQ

>peptide 4 (50 aa)
SWRCKGHLHRRTRPHGRSSRAGPSRRSVRCADCHCHWCSGSSLPPSSHSS*

Sequence

>CNT30242796
GTAGTTGGCGCTGCAAGGGTCATCTGCATAGGCGAACACGGCCTCACGGTCGATCGTCAAGAGCAGGTCCTTCTCGCAGAAGCGTGCGTTGTGCAGATTG
CCATTGTCATTGGTGCTCAGGGTCTTCCTTGCCACCGTCTTCACACAGTTCTTGACAGCATTCTTGACATTCTCCTCAAGGTGGCGCAGATCGATAGCTT
GGCACAACGCAACCATGAATGTTGAGGACATGAGCTTCAGAATGTCGATGGCCTCAGCGGTCTTCCTGGAAGAGATGAGACCGAGAGAGTTGACGTCTTG
GTTGTGTTGCTCCGCACTCTGCACATGGTTAGTCACAGGGTTGCCCAAGAATTGGAGCTCAGAGCAGTACGAGGCCATGGCAATCTCAGCACCCTTGAAG
CCGTAGTCCAA