« Back to Brassica oleracea search


Detailed information on CNT30237729


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226941Brassica oleraceaHordeum vulgare27.5220.6594.78134forward
CNT30555485Brassica oleraceaOryza glaberrima21.978.5797.2107reverse complement
CNT30626258Brassica oleraceaDaucus carota24.4416.8896.64119forward
CNT30596787Brassica oleraceaOryza meridionalis36.5541.9887.64178forward
CNT3055626Brassica oleraceaAmborella trichopoda34.521.7191.67168forward
CNT30576588Brassica oleraceaOryza barthii22.7925.2893.69111reverse complement

Expression of CNT30237729

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQRKDPEITNNERIHILTFRAHFKISALLFPSSGNH

>peptide 2 (38 aa)
MTERKTKERKKNAPKCMCCTKCWWLFLVVSECNEKTRK*

>peptide 3 (69 aa)
TDFSNHFLVRNEGEIKLSSSRSSRKKKKKDFPYGLLVLRHYGFGVDHGNKENIHKNLRSDTIIKYYPHD*

Sequence

>CNT30237729
ACTGATTTTTCAAACCACTTTCTTGTTCGTAACGAGGGAGAGATAAAATTGAGTTCTTCACGAAGTTCGAGAAAAAAAAAAAAAAAAGACTTTCCCTATG
GCCTCCTTGTTTTAAGACATTATGGCTTTGGGGTCGACCACGGTAACAAAGAAAATATCCATAAAAATTTGAGATCCGACACCATAATAAAATACTACCC
TCATGATTAGACCATGTTCCTGAGTTTTGATAAAAGAAAGGTGCAATAGCGGTTAATACGTTGTAATTGGATAAGTTATTAGGAATATGACAGAACGAAA
GACCAAGGAAAGAAAGAAGAATGCACCAAAATGCATGTGCTGCACCAAATGCTGGTGGTTGTTTCTTGTTGTAAGTGAATGCAACGAAAAGACCCGGAAA
TAACGAATAATGAAAGAATTCATATATTGACATTTCGTGCTCATTTCAAGATTTCTGCTTTGTTATTCCCATCATCCGGTAACCACA