« Back to Oryza meridionalis search


Detailed information on CNT30596787


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3086254Oryza meridionalisVigna radiata29.019.3184.55123forward
CNT30237729Oryza meridionalisBrassica oleracea54.7247.6486.64232forward
CNT30626258Oryza meridionalisDaucus carota22.8813.7695.8897forward

Expression of CNT30596787

Peptides detected in this lncRNA

>peptide 1 (48 aa)
PSREPRERPAPRRAKLIFKTGSSGALKRAGPLKGRLLCEGSSESTKVL*

>peptide 2 (79 aa)
FSRTTGAPSAQKSKAHFQNRVKRRIKKGWPVKRTLTLRRKFRINKGSLNERGCTTGEQPHFFVGEIEWSSSRSSRQRKK*

Sequence

>CNT30596787
CCTTCTCGCGAACCACGGGAGCGCCCAGCGCCCAGAAGAGCAAAGCTCATTTTCAAAACAGGGTCAAGCGGCGCATTAAAAAGGGCTGGCCCGTTAAAAG
GACGCTTACTTTGCGAAGGAAGTTCAGAATCAACAAAGGTTCTCTGAACGAAAGGGGGTGTACAACTGGGGAGCAGCCCCACTTTTTTGTTGGAGAGATA
GAATGGAGTTCTTCACGAAGTTCGAGACAAAGGAAAAAATAAATGTTTCTCTATAGCCTCTTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGGTA
AAAAAAGGAATCCATAAAAACTTGGGATCCAACACCATGATAAAATACTACCCTCATGATTAGACCATGCCCCTGAGATTTGATAAAAAAAAGATGCATT
AGCGGTTAATACGTTGTAATTAGA