Detailed information on CNT30576588


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674232Oryza barthiiSetaria viridis28.725.299.21126forward
CNT30177674Oryza barthiiSecale cereale29.616.499.23130forward
CNT30300330Oryza barthiiTriticum aestivum29.1659.8199.22128reverse complement
CNT30221081Oryza barthiiHordeum vulgare29.616.4299.23130reverse complement
CNT30384202Oryza barthiiTriticum turgidum29.617.8599.23130forward
CNT30538116Oryza barthiiBrassica napus29.6110.7393.85130reverse complement
CNT30237729Oryza barthiiBrassica oleracea25.2822.7993.69111reverse complement
CNT30553653Oryza barthiiOryza glaberrima70.8415.9999.68311reverse complement
CNT3017337Oryza barthiiZea mays29.6122.8199.23130reverse complement
CNT3067405Oryza barthiiLeersia perrieri28.2529.9598.39124reverse complement
CNT30647597Oryza barthiiRosa chinensis28.4724.5192.8125reverse complement
CNT30203328Oryza barthiiHelianthus annuus29.6115.896.15130reverse complement
CNT30683269Oryza barthiiTriticum urartu29.6123.3899.23130reverse complement
CNT30596724Oryza barthiiOryza meridionalis22.324.0510098forward
CNT30371505Oryza barthiiOryza glumipatula29.3852.23100129reverse complement
CNT30409295Oryza barthiiPapaver somniferum29.6123.0194.62130reverse complement
CNT30149641Oryza barthiiBrachypodium distachyon29.616.4599.23130reverse complement
CNT30102660Oryza barthiiOryza rufipogon21.1824.8789.2593reverse complement
CNT30604605Oryza barthiiOryza punctata23.0143.7297.03101forward

Expression of CNT30576588

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MLIPQIPSLFLLREKKLTTRGPSTSTRHCSVRLSPIAENSPL

>peptide 2 (44 aa)
MSINEFSHYLLFPGLFVAFALRTRSPLCSQLFRFQQTEAVRSKP*

>peptide 3 (47 aa)
MNFLIICYFRVFSLHSRYAPVRHFVLNYSDSSKRRPLGQSRSARPVF*

Sequence

>CNT30576588
TAAAGTGTCATGAAAGTTCGTGAAAGAATGTTCTTGTTTTTCGTTGGAAAACCCAACGCCACGGCCTAAGGAGATTGGGATCATCCTGTGGTTACCGGAT
GATGGGAATAACTAAGCAGAAATTTTGAAATGAGCACGAAATGTCTATAAATGAATTTTCTCATTATTTGTTATTTCCGGGTCTTTTCGTTGCATTCGCG
TTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTGTATTTTGAAGCAGG
GCGAGACTACCGATGCTTATTCCTCAGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCT
CCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGC