« Back to Hordeum vulgare search


Detailed information on CNT30226941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670887Hordeum vulgareSetaria viridis11.8633.3310077forward
CNT30237729Hordeum vulgareBrassica oleracea20.6527.5294.78134forward

Expression of CNT30226941

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MSQSQRQGRENASSRLSRKWTSMAVPISLRGVPLFFSSQLKRFKRESHSPYSWLVEWKQDSFLSTLPRGEN*

Sequence

>CNT30226941
GGTGGTTGTTTCTTGTTGTAAGTGAATGCAACGAAAAGACCCGGAAATAACGAATAATGAGAAAATTCATTTATAGACATTTCGTGCTCATTTCCAAATT
TCTGCTTAGTTATTCCCATCATCCGGTAACCACAGGATGATCCCAATCTCCTTTTAGTAATAGATCTTTTTGATATGTCTCAGTCTCAGCGGCAAGGAAG
AGAAAATGCATCGAGTCGTTTATCAAGAAAGTGGACGAGCATGGCGGTCCCTATATCTCTGAGGGGTGTACCACTTTTTTTTTCAAGTCAGCTTAAGAGG
TTCAAAAGAGAAAGTCACTCTCCTTATTCTTGGCTAGTGGAATGGAAGCAAGACTCTTTCCTATCCACTTTGCCGAGGGGAGAGAACTAAAAGATAACTC
AAGCTAGACAGAAAGGTGCAAAAGTCCACAGTTTCTTAAGGATCCTGTAAGCAAGTAGGTTAAGATTGTCATTTAGCTTCAATTTCTTCAGTCTCACAAG
CGGGTCCGCATGCAACAAAAGAAATTGTATTTGCCTACTACTCCGACCTTGCCCTGAAAGGATAAGAAAATTGGATAAGAGCGAGAGCTAGACTGACTGT
TGGTCCAATGCTAGTGGAGGATTCAGACTGAGGACCCCCTGTGGCGGCT