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Detailed information on CNT30690690


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40194|RB11D_LOTJA, E-value = 1e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30231532Oryza sativaAnanas comosus20.1723.4389.92119forward

Expression of CNT30690690

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MKYNDSASAYSFPSSVETATRWRRSDLLPTSMTTILGSVWSLSSFSQRATLSKVARRVTS*

Sequence

>CNT30690690
TCAACCGTCTTCTTGCTGACAGTTTGGTATATCTGAGTCAAAACTTCTGCAAAAGCATTCTCTACATTTGTGGCGTCTAATGCAGATGTCTCCATGAAGT
ACAATGACTCAGCCTCAGCATATTCCTTTCCATCTTCAGTTGAAACAGCCACCAGATGGCGGAGATCGGATTTGTTGCCTACTAGCATGACAACAATACT
AGGGTCAGTGTGGTCTCTCAGCTCTTTTAGCCAGCGTGCCACATTATCGAAAGTAGCACGCCGAGTGACATCATAGACAAGCAGTGCACCTACTGCTCCT
CTGTAATAGGCACTTGTAATAGCACGGTATCTGCCAACAGAAGGAAAATATTAGGTAATCATATAATTATGCACTAAAGAAAATCATAAAGAAGGATCAG
CTACTCCCACTCGGCTAGAGTAGGAGAGGAAGGGGGAGGCCGTACGTACCTCTCCTGGCCGGCGGTGTCCCAAATCTGGGCCTTGACGACCTTGCCGTCG
ACCTGGATGCTGCGGGTGGCGAACTCGACCCCGATGGTGGACTTGGACTCGAGGCAGAACTCGTTCTTGGTGAAACGCGACAGCAGGTTG