Detailed information on CNT30378531


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZD4|RAE1D_ARATH, E-value = 3e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692241Arabidopsis thalianaOryza sativa31.7420.6881.2133forward
CNT30402584Arabidopsis thalianaBeta vulgaris45.5818.6984.82191forward
CNT30231532Arabidopsis thalianaAnanas comosus43.4435.8380.22182forward
CNT30215813Arabidopsis thalianaHelianthus annuus47.0217.3980.2197forward
CNT30338755Arabidopsis thalianaEragrostis tef31.9824.180.6134forward
CNT30368401Arabidopsis thalianaSorghum bicolor31.9837.2282.09134forward
CNT30332519Arabidopsis thalianaDioscorea rotundata20.5323.6984.8886forward

Expression of CNT30378531

Peptides detected in this lncRNA

>peptide 1 (50 aa)
IPNLSFDDLIIDMDATSGEFYTDRGFRFETELVARESRKEVGFSNAGVSN*

>peptide 2 (43 aa)
MLRVANSTPIVDLDSRLNSLRVNRERRLDFPTPESPINTTLKR*

Sequence

>CNT30378531
TATCCCAAATCTGAGCTTTGACGATCTTATCATCGACATGGATGCTACGAGTGGCGAATTCTACACCGATCGTGGATTTAGATTCGAGACTGAACTCGTT
GCGCGTGAATCGAGAAAGGAGGTTGGATTTTCCAACGCCGGAGTCTCCAATTAACACAACTTTGAAGAGGTAATCGTACTCGTCGTCGGCTCTATATGCG
GCCATTGTGAGGTTCTCTGATTAGAGAATCTCTCCTCGGAAAATTTTATGGATCTGAGATTTCTAGAAATTTAGCGCGTATCGATCAACCAATGAGAAGA
AGAACAAAAAAAGAAGAGAGAGTTTCAAATTTCCAGGGGAAAGACAAAAATGTTAAAAAATAAATCAAGGAGATCCGGATCCGACTTAATTTCGGGTCTG
GGTTGTTATCCAGGTCCTT