Detailed information on CNT30332519


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40195|RB11E_LOTJA, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316968Dioscorea rotundataCorylus avellana18.1824.6386.3666forward
CNT30378531Dioscorea rotundataArabidopsis thaliana23.6920.5384.8886forward
CNT30231532Dioscorea rotundataAnanas comosus21.2115.1685.7177forward
CNT30368401Dioscorea rotundataSorghum bicolor28.9329.1781.9105forward

Expression of CNT30332519

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VKFQQIQPKKYYQNRYLKIVRTGVLQIWN*

>peptide 2 (30 aa)
EIPANSTKKILSKPLSEDCKNWCPSNMELS*

Sequence

>CNT30332519
GTGAAATTCCAGCAAATTCAACCAAAAAAATACTATCAAAACCGCTATCTGAAGATTGTAAGAACTGGTGTCCTTCAAATATGGAACTAAGCTGAACAGC
AACCAGCTTTTTTCACAGCAGATACATCATCCTTGCCACCAACATTGATTGTCTGCCCCTTTGGCAGAGCTGCGGGATCATCACCGACATCAAGTGCCTT
CCGGCTGAACTCATTGCGTGTGAATCTGGATAGAAGATTGGATTTCCCAACGCCGGAGTCCCCAATCAACACCACCTTGAAGAGATAATCATAGTCATCA
TCCGCCCTATACGCCATTAGATCAAACGCGAACAACAATGAATAGATCTCTCTCTCTCTCTCT