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Detailed information on CNT30111747


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05349|12KD_FRAAN, E-value = 7e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513661Ficus caricaJuglans regia18.0923.1783.09136forward
CNT30229845Ficus caricaAnanas comosus11.1720.6483.3384forward

Expression of CNT30111747

Peptides detected in this lncRNA

>peptide 1 (33 aa)
CDQKNIIPTIKTKSNYSKKKKQNKTKIREFHRY*

>peptide 2 (52 aa)
MEDAPPHVLLTRRQRRRRRHRRSWARRHRYRPLLAKTTFRRRPSHHIIPQFI*

>peptide 3 (59 aa)
AIKKTLYQLLKPNQIIPKKKNKTKQKLENSTVINRHFFKQSALFRFYPFCIYIFIFRSK*

>peptide 4 (70 aa)
MPLVARLLPGWKTLLHTFSLRADSGVDGVTGVPGLAGIDIDLCLPRPRSGEGPATTSSHSLSSRTMFLLL*

Sequence

>CNT30111747
CTGCGATCAAAAAAACATTATACCAACTATTAAAACCAAATCAAATTATTCCAAAAAAAAAAAACAAAACAAAACAAAAATTAGAGAATTCCACCGTTAT
TAATAGGCACTTTTTTAAACAATCAGCTCTATTTAGATTTTATCCATTTTGTATATATATTTTTATTTTTAGATCTAAGTAAAACATGCAGAAACTTTCT
TCAAGAATTCCTTATTACATTATTTATATTTAAAAAAATTCTAATTAACCATAACAGTTCCTTAGAACACCAAAAAAAAAAAAAAAAAGAAGAAACTTAT
ATGCATCGCCAAGGGGGAAAAAAAAGTACGTAGGTATAGTGTTGTATGTGGTGTATGTATTGTGTGTGTGTGTATATATACCAGTCGTAGACAGTGGGAG
AATTGGGGGACTCGGGCTTGTCGAAGAGGGCGGCGCCGATGCCCTTGGTGGCGAGGTTGCTGCCAGGATGGAAGACGCTCCTCCACACGTTCTCCTTACG
CGCCGACAGCGGCGTCGACGGCGTCACCGGCGTTCCTGGGCTCGCCGGCATCGATATCGACCTCTGCTTGCCAAGACCACGTTCAGGAGAAGGCCCAGCC
ACCACATCATCCCACAGTTTATCTAGCAGGACCATGTTTCTTTTGCTCTGATCTGATCTAATCTCTATCAACTCAAACCTGATTACAATATATCTATTTA
ACCTAAAGGGCTAATTATTAAGCCTCCCTCTTTTCTTTCTTCCGTCCAAAGG