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Detailed information on CNT30463176


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Saccharum spontaneumOryza sativa13.9522.5494.8778forward
CNT30223563Saccharum spontaneumHordeum vulgare17.7120.1692.9399forward
CNT30683568Saccharum spontaneumTriticum urartu23.7927.0990.23133forward
CNT30338280Saccharum spontaneumEragrostis tef27.1928.3692.11152forward
CNT30104073Saccharum spontaneumOryza rufipogon24.5116.9891.97137forward

Expression of CNT30463176

Peptides detected in this lncRNA

>peptide 1 (33 aa)
KNGTSIELRIHMSLTREPHIAPTYSTQLYTQRK*

>peptide 2 (71 aa)
MKQVQEHLDARPPPPHPTSSQSHSHKQQLISKYRNTSTHGRPHPTSSQSHSHKQQLISKVLKRTYYCEPSN*

Sequence

>CNT30463176
CAAAAATGGTACAAGCATTGAGCTACGGATACACATGAGCTTGACTAGGGAGCCACACATCGCTCCCACTTATTCAACACAATTATACACGCAGAGAAAA
TGAAGCAAGTACAGGAACACCTCGACGCACGGCCGCCCCCGCCCCACCCCACCTCTTCTCAGTCTCACTCACACAAGCAACAGCTTATTAGCAAGTACAG
AAACACCTCGACACACGGCCGGCCCCACCCCACCTCTTCTCAGTCTCACTCACACAAGCAACAGCTTATTAGCAAGGTCCTGAAAAGGACTTATTATTGT
GAACCGTCAAATTAACACGCACGCAGTACAGAATTAAACAGGTGGTGGCGCGCCGGAGCTCGATCGCCGTCCGGTACGGTACGGTCAGCCGAAGAGGTGG
TGGTGCTTCTTCTCGCCGCTGGCCTCCTCGGCGTCCTTGTGGTCCTTCTTCTTCTCGTGGTGCTCGTGGAAGGCGTAGCCGCCGGCGCCCACGGCTGTCG
CCGCCGCGACCTCCTCCGTGATCTTGTGCCTGTGCGCGTGCTCGGGGTCCTTCTTCGCC