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Detailed information on CNT3019571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536152Citrullus lanatusEucalyptus grandis14.7531.1783.22149reverse complement
CNT30374484Citrullus lanatusArabidopsis thaliana9.1121.6584.7892forward
CNT30710572Citrullus lanatusGlycine max15.5435.1280.89157forward
CNT3043742Citrullus lanatusPrunus dulcis23.4736.1883.97237forward
CNT30542943Citrullus lanatusBrassica napus23.4751.0878.9237forward
CNT30363257Citrullus lanatusSorghum bicolor14.263284.03144forward

Expression of CNT3019571

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPGVGTLVHGIQVQCGFRRIPSNRTLFSAK*

>peptide 2 (77 aa)
MEWSPSRRISGSTIGTRPLSCVNKVNYEISTKETEEKSCIWNEKSLQIYDPVICISYQVEQNPRFLTNRIPHDLLIDK

>peptide 3 (38 aa)
MVEYNFLTLSVSLLLTGLIIKSFLSREGKGREGKAFIL*

>peptide 4 (90 aa)
MAFRFNVALEGFLQTEHCFQPNRRILLTRPFQPLQVFCQWNGPHQEGSQVLQLVQGHCPALTKLIMKSLLKRQKKRVVFGMKNLFKYMIL*

Sequence

>CNT3019571
TAAGAGAGATAATATCACTAATTCTCCATTATTCGAAATAAAACGTAAAGCATATAATTAATTAAAATGTTTTTGGCGAACATAATTATTGCCAACAAAG
TGGACTCACTTTACAGGAAGGATAAGAGTCATACTGCATAATAAAGCCTAAAACTCAAAAACTACATTTTAAAACTTGCCAATCTAACAAAATACTAACA
ACTTAACTTGTAAAAAGATGGTAGAATACAATTTTCTTACTCTCTCAGTGAGTTTGCTTCTCACAGGTCTTATTATAAAAAGCTTTCTATCCAGGGAAGG
GAAGGGAAGGGAAGGGAAGGCTTTTATCCTGTAGAGAAAAAAGAAAAAAGAAAAGTCGTCTTCTTCAGTGGAGGACAAGAAACGAGCACACACATTCAAC
ACGAGTTCTGGGCACAGAATCAATTTACTGAGGCTCAGTAAGTATATCCCTTCACAAACATTCCTGTCTTGGCATCGTCACTTTCACCCTCAGCAGAGTA
CTTACCGAGCTGAGCAAGGGAGTTTGCCTTTGCACGCACCAGAAGTGCTTTCTGTGCAGCCTCCACGTTTTCGGGGTGTCCTTGCCATGTCTTGAGCACG
GTGTTCTGCAACGCACGGGCATAAGAGAAGGATACATGCCAGGGGTTGGGACTTTGGTTCATGGCATTCAGGTTCAATGTGGCTTTAGAAGGATTCCTTC
AAACAGAACATTGTTTTCAGCCAAATAGAAGAATACTTCTGACCAGACCTTTTCAGCCACTTCAAGTGTTCTGTCAATGGAATGGTCCCCATCAAGAAGG
ATCTCAGGTTCTACAATTGGTACAAGGCCATTGTCCTGCGTTAACAAAGTTAATTATGAAATCTCTACTAAAGAGACAGAAGAAAAGAGTTGTATTTGGA
ATGAAAAATCTCTTCAAATATATGATCCTGTAATATGTATTTCCTACCAGGTAGAACAAAACCCAAGATTCTTAACTAACAGAATCCCTCATGATTTGCT
AATAGATAAA