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Detailed information on CNT30374484


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZU52|ALFP3_ARATH, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676856Arabidopsis thalianaSetaria viridis49.4131.9680210forward
CNT30639585Arabidopsis thalianaNymphaea colorata11.7620.839050forward
CNT30536152Arabidopsis thalianaEucalyptus grandis42.8238.0882.42182reverse complement
CNT3019571Arabidopsis thalianaCitrullus lanatus21.659.1184.7892forward
CNT30381313Arabidopsis thalianaManihot esculenta30.3522.9187.6129forward
CNT30405165Arabidopsis thalianaBeta vulgaris2016.2284.7185forward
CNT30295969Arabidopsis thalianaTriticum aestivum13.6525.1191.3858forward
CNT30392715Arabidopsis thalianaTriticum turgidum13.6525.1191.3858forward
CNT30586189Arabidopsis thalianaMusa acuminata37.8822.5583.85161forward
CNT30542943Arabidopsis thalianaBrassica napus39.7636.4291.12169forward
CNT30258087Arabidopsis thalianaAvena sativa35.7632.4882.24152forward
CNT30663719Arabidopsis thalianaTriticum dicoccoides13.6522.2291.3858forward
CNT306434Arabidopsis thalianaZea mays35.0659.1380.54149forward
CNT30610790Arabidopsis thalianaGossypium raimondii19.7627.4583.3384forward
CNT30319836Arabidopsis thalianaAsparagus officinalis33.8818.0583.33144forward

Expression of CNT30374484

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RAGPVSWPLPSPTVPSARPQSSPACLAMF*

>peptide 2 (38 aa)
MRRTHAMGLGSGSWRSAPGVTMLGFNRMPSNMTLFCAK*

>peptide 3 (82 aa)
PSWASELAFALTNSAFCEASIFSGLPCHVLSTEFCRARAYEKDTCHGFGLWFMAFSAWGDHARLQQNALKHDVVLCQVEEHL*

Sequence

>CNT30374484
CCGAGCTGGGCCAGTGAGTTGGCCTTTGCCCTCACCAACAGTGCCTTCTGCGAGGCCTCAATCTTCTCCGGCTTGCCTTGCCATGTTCTGAGCACGGAGT
TCTGCAGGGCACGTGCGTATGAGAAGGACACATGCCATGGGTTTGGGCTCTGGTTCATGGCGTTCAGCGCCTGGGGTGACCATGCTCGGCTTCAACAGAA
TGCCCTCAAACATGACGTTGTTCTGTGCCAAGTAGAAGAACACCTCTGACCACACTTTCTCTGCCACCTCCAGAGTCCTCTCTATTGGGTGGTCCCCGTC
CAGAAGGATCTCTGGCTCCACAATGGGGACAAGACCATTATCCTGAGAGATGGCTGCATAGCGAGCCAGCCCCCACGCAGCTTCCTTCACAGCCAGTGCT
GAAGGACCGCAGGGAACACTCACCA