Detailed information on CNT30363257


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019571Sorghum bicolorCitrullus lanatus3214.2684.03144forward

Expression of CNT30363257

Peptides detected in this lncRNA

>peptide 1 (30 aa)
ERELKILAHTKIKAGFHLLCLAQVAPWLGI*

>peptide 2 (42 aa)
MSWKYLASTLVATELCQRVGLCTRQQGLLRCLHVLRAPLPCL*

>peptide 3 (39 aa)
RARVENTCAYKNQGRFSPVVLGTGGTLARNIIYQIANIT*

Sequence

>CNT30363257
CAGAGCGAGAGTTGAAAATACTTGCGCATACAAAAATCAAGGCAGGTTTTCACCTGTTGTGCTTGGCACAGGTGGCACCTTGGCTAGGAATATAATTTAC
CAGATTGCAAATATCACTTAACGTTCTCAGAGTACATGTTCGTTCTCAAGGTTCTACAGGAGCTCTAACATCAAATACAATGCTAGAAGTTGTTGGCACC
AACAATTTGGTTATTATTCACTCGACCGTACCCAAATAAAAAACCGTGACACCAAAACGATAAGTATAATGTCATGGAAATATCTCGCTAGCACGTTAGT
AGCGACCGAGCTGTGCCAGCGAGTTGGCCTTTGCACGCGCCAGCAGGGCCTTCTGCGCTGCCTCCACGTTCTCAGGGCGCCCTTGCCATGTCTTTAGCAC
CGAGTTCTGCAGAGCCCGGGCATAGGAGAATGATACATGCCATGGGTTCG