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Detailed information on CNT3043742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019571Prunus dulcisCitrullus lanatus36.1823.4783.97237forward

Expression of CNT3043742

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAFSRVYLEASTDYFSGESVLVVWLSLTLGLVAAGERVI*

>peptide 2 (94 aa)
MSLPCLKHRVLQSTCIREGNMPWVGALVHCIEDEFVGVGLSSDRDGDSASREAGGRSVALSEGLLADPLRRRRIKLREARTGHGFFESLLGGVD*

Sequence

>CNT3043742
GCCCTCAAGTCTTTCTAGTGGGGAAAAAGAAATGAAAAAGCTTTTACTCAGCATATATAGCTAACTCCAAAAAAATAAAATGCTGTAAATTACATCCTTT
TCAAGTTCCCGAAGGAATGAACTGCCTCAGACTCTGGCTTAGTAAGTATAGCCCTTGACGAACATTCCTTTCTTGGCTTCCTCATCCTCACCCTCAGCAG
AGTACCTTCCTAGCTGAGCCAAGGAGTTTGCCTTTGCTCGGACCAACAGTGCCCTTTGTGCAGCTTCCACGTTCTCAGGATGTCCTTGCCATGCCTTAAG
CACAGAGTTCTGCAGAGCACGTGCATACGAGAAGGAAACATGCCATGGGTTGGGGCTTTGGTTCATTGCATTGAGGATGAGTTCGTCGGTGTAGGCCTTA
GCTCGGATCGGGACGGCGACTCGGCGAGTAGAGAGGCTGGTGGACGATCCGTGGCGCTGAGTGAAGGACTGCTGGCCGATCCACTGAGACGACGCCGCAT
TAAGCTTCGCGAGGCTCGAACAGGCCATGGCTTTTTCGAGAGTTTACTTGGAGGCGTCGACTGATTATTTTTCCGGAGAAAGTGTTTTGGTGGTTTGGTT
AAGTCTGACTCTTGGGTTGGTGGCTGCGGGAGAGAGAGTGATATAATAAGACGAC