Detailed information on CNT30193534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693976Secale cerealeOryza sativa22.5813.7586.47133forward
CNT30307995Secale cerealeTriticum aestivum99.8385.3496.43588forward
CNT30226224Secale cerealeHordeum vulgare58.2396.0895.92343forward
CNT30443328Secale cerealeAegilops tauschii96.690.7596.49569forward
CNT30670119Secale cerealeTriticum dicoccoides10048.895.76589forward
CNT30688632Secale cerealeTriticum urartu96.2694.0394.53567forward

Expression of CNT30193534

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTRLGCLWGVCTWRLWRPNKITRLGYLLVQ*

>peptide 2 (63 aa)
FTDVVIAGAWAAGVELCVGIPTVPRFTCGEAPLTGACEVPPNGLALFLPLNQSVDRFAVVEPV*

Sequence

>CNT30193534
CTTTACAGATGTCGTAATAGCCGGTGCCTGGGCTGCAGGAGTTGAACTCTGTGTTGGTATTCCCACGGTGCCAAGGTTCACCTGTGGAGAAGCACCTCTA
ACTGGAGCTTGCGAAGTACCTCCCAATGGACTTGCACTTTTCTTGCCACTGAACCAATCGGTGGATAGATTTGCCGTCGTTGAACCAGTCTGATTTAGCC
CACTTAGACCACCTCCTACGGGTGGCCTTGGTGCTATTCCCTGAGCAGGGGGAATGTTTGCATTTGGAGGTTGTGGCGGCCTAACAGGATGACCCGGTTG
GGGTGCTTGTGGGGTGTTTGCACTTGGAGGTTGTGGCGGCCTAACAAGATTACCCGGTTGGGGTACTTGTTGGTTCAATGACGATCCAGGAGGGCCCTGT
GATCCATTTACAACTGGAGTCTGTTGACGAGGACCTAATGCCTGAGTGGGCTGTGGGGGGCTAGTGAGACTATTTGCCTGAGGAGCGGCAGTGGGGATAT
TTATACGGGGAGCGGGAATTTTTGCAGCAGCTGGACCAAATAATGCTGACTTAACAATGTCCGGTGTCAACTGTCGACCACTCTGTGCG