Detailed information on CNT30132420


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00434|PSBP_WHEAT, E-value = 3e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521677Lolium perenneSetaria italica37.2291.6388.26230forward
CNT30180672Lolium perenneSecale cereale13.4334.1693.9883forward
CNT30290797Lolium perenneTriticum aestivum10.8423.3497.0167forward
CNT30610345Lolium perenneGossypium raimondii15.8638.2883.6798forward
CNT30680718Lolium perenneTriticum urartu17.6430.792.66109forward
CNT30349048Lolium perenneEragrostis tef37.3840.4686.58231forward
CNT30583123Lolium perenneEchinochloa crusgalli39.1649.6985.95242forward

Expression of CNT30132420

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PRSRCFRRMTAGRGGIRPRRGTAQGIRSR*

>peptide 2 (51 aa)
MQPRRSSAPCRRAAGCARLLARGAPRRPAARWTGGGSRRWTPLLLSAVCLA*

Sequence

>CNT30132420
CCTCGGAGTCGGTGTTTCCGCCGTATGACTGCTGGCCGAGGAGGAATCCGACCTCGGAGAGGAACTGCTCAGGGGATCCGTAGTCGGTGATGGTCTTCTT
GGTGGTGGGCTGGATGACGACGGAGAGGTTGCTGGTGGCGTCGAAGTTGTCCTCGTAGCGGAGCACCTGGCCGGGGAACTCACGCTCCTTGCTCGGGTTC
CACTTGGCCGGGACCAGCAGCTTGAACCCCTCCCCGGTGTACGTCTTGAAGTCCGTGTTCTTCTTCGCCTTCCCGAACACGTTGGCTGCACACAGATCAA
ACATTCATGCATGCATATTTCATTCACCCGAAACGAGACCGTCTCGTCTGAATAGGCGTTCTTTCTTCGTACCTGCTTCTCCGTAGGCGGCGGCGGCCGC
GCCGGCGAGTAGTGACAGCGCGGCGCGGCGGCTGGTGACGACGGCCGAGGCGTCAGATGCAGCCTCGTCGTTCTTCTGCGCCTTGCAGACGAGCAGCTGG
GTGCGCCCGACTGCTGGCGCGGGGCGCGCCGAGGCGGCCAGCCGCGCGGTGGACTGGTGGAGGAAGCAGGAGGTGGACGCCATTGCTGCTATCTGCTGTC
TGCTTAGCTTAGCTTAGG