Detailed information on CNT30180525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30290797Secale cerealeTriticum aestivum102.86100.3594.1288forward
CNT30220889Secale cerealeHordeum vulgare44.2948.0693.55124forward
CNT30242677Secale cerealeAvena sativa76.0780.9988.26213forward
CNT30657847Secale cerealeTriticum dicoccoides101.4397.5993.66284forward
CNT30680271Secale cerealeTriticum urartu10087.593.93280forward
CNT30349044Secale cerealeEragrostis tef30.7128.8689.5386forward

Expression of CNT30180525

Peptides detected in this lncRNA

>peptide 1 (76 aa)
CFSVGGSGGGDLDGDGGRSGEEGQRGPPAGDDGSVRCNLVVLLRLTDEQLGAPDGRRAVDWWRKQEVDAIARCCLA*

>peptide 2 (42 aa)
MQPRRSSAPYRRTAGCARRPARGGLVEEAGGGRHCSLLFSLA*

Sequence

>CNT30180525
CTGCTTCTCCGTAGGCGGCAGCGGCGGGGGAGACCTTGACGGCGACGGCGGCCGCTCCGGCGAGGAGGGACAGCGCGGCCCGCCGGCTGGTGACGACGGC
AGCGTCAGATGCAACCTCGTCGTTCTTCTGCGCCTTACAGACGAACAGCTGGGTGCGCCCGACGGCCGGCGCGCGGTGGACTGGTGGAGGAAGCAGGAGG
TGGACGCCATTGCTCGCTGCTGTTTAGCTTAGCTTAGCTAGGACTGTGCGTGCGTGCGCGTGGGTATGGTGTGTGTCGCG