Detailed information on CNT30220889


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180525Hordeum vulgareSecale cereale48.0644.2993.55124forward
CNT30288434Hordeum vulgareTriticum aestivum48.0653.6896.77124forward
CNT30242677Hordeum vulgareAvena sativa49.2248.2991.34127forward
CNT30659934Hordeum vulgareTriticum dicoccoides48.0647.5196.77124forward
CNT30680271Hordeum vulgareTriticum urartu48.0638.7596.77124forward
CNT30349046Hordeum vulgareEragrostis tef20.9315.3890.7454forward

Expression of CNT30220889

Peptides detected in this lncRNA

>peptide 1 (55 aa)
GRDLDGDGGGTGEEGQRGAPAGDDSSVRCSLVILVRLADEQLGGGRHCSLLFSLA*

>peptide 2 (53 aa)
GETLTATAAAPARRDSAARRLVTTAASDAASSFLCALQTNSWEVDAIARCCLA*

Sequence

>CNT30220889
GGGAGAGACCTTGACGGCGACGGCGGCGGCACCGGCGAGGAGGGACAGCGCGGCGCGCCGGCTGGTGACGACAGCAGCGTCAGATGCAGCCTCGTCATTC
TTGTGCGCCTTGCAGACGAACAGCTGGGAGGTGGACGCCATTGCTCGCTGCTGTTTAGCTTAGCTTAGCTAGGACTGTGCGTGCGTGCGCGTGGGTATGG
TGTGTGTCGCGTTAACTAAGGAGATCGGTGGGGTCCGGAGCCGCGAGACTACTCGTGG