Detailed information on CNT30242677


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180525Avena sativaSecale cereale80.9976.0788.26213forward
CNT30288434Avena sativaTriticum aestivum72.2482.2591.58190forward
CNT30220889Avena sativaHordeum vulgare48.2949.2291.34127forward
CNT30659934Avena sativaTriticum dicoccoides78.7179.3188.89207forward
CNT30680271Avena sativaTriticum urartu79.4765.3190.91209forward

Expression of CNT30242677

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MQPLRSSAPCRRTAGCGQPRRGLVEEAGGGRHCCSCCLFDRLSLGLCVRVGR

>peptide 2 (79 aa)
FSVGGGSGGDLDGDGCGAGEEGQRGASAGDDRGGVRCSLFVLLRLADEQLGAASRAVDWWRKQEVDAIAAAAVCSTGLA*

Sequence

>CNT30242677
TTCTCCGTAGGCGGCGGCAGCGGGGGAGACCTTGACGGCGACGGCTGCGGCGCCGGCGAGGAGGGACAGCGCGGCGCGTCGGCTGGTGACGACCGCGGTG
GCGTCAGATGCAGCCTCTTCGTTCTTCTGCGCCTTGCAGACGAACAGCTGGGTGCGGCCAGCCGCGCCGTGGACTGGTGGAGGAAGCAGGAGGTGGACGC
CATTGCTGCAGCTGCTGTTTGTTCGACAGGCTTAGCTTAGGACTGTGCGTGCGCGTGGGTAGG