Detailed information on CNT30680271


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180525Triticum urartuSecale cereale62.571.4394200forward
CNT30288434Triticum urartuTriticum aestivum51.8871.8697.59166forward
CNT30220889Triticum urartuHordeum vulgare37.1946.1294.96119forward
CNT30242677Triticum urartuAvena sativa34.0641.4491.74109forward
CNT30657847Triticum urartuTriticum dicoccoides65.9472.5195.73211forward

Expression of CNT30680271

Peptides detected in this lncRNA

>peptide 1 (77 aa)
LARTCFSVGGGGGGDLDGDGGGTGEEGQRGAPAGDDGSVRCSLVILLRLADEKLGAPDGARWTGGGSRRWTPLLAAV*

>peptide 2 (62 aa)
MAAAPARRDSAARRLVTTAASDAASSFFCALQTKSWVRPTARGGLVEEAGGGRHCSLLFSLA*

>peptide 3 (39 aa)
MQPRHSSAPCRRKAGCARRRAVDWWRKQEVDAIARCCLA*

Sequence

>CNT30680271
CTAGCTCGTACCTGCTTCTCCGTAGGCGGCGGCGGCGGGGGAGACCTTGACGGCGATGGCGGCGGCACCGGCGAGGAGGGACAGCGCGGCGCGCCGGCTG
GTGACGACGGCAGCGTCAGATGCAGCCTCGTCATTCTTCTGCGCCTTGCAGACGAAAAGCTGGGTGCGCCCGACGGCGCGCGGTGGACTGGTGGAGGAAG
CAGGAGGTGGACGCCATTGCTCGCTGCTGTTTAGCTTAGCTTAGGCAGGACTGTGCGTGAGTGGCGTGGGTATGGTGTGTGTCGCGTTAACTAAGGTGAT
CGGTGGGGTCCGGAGGCGCG