Detailed information on CNT30177347


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 2e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533207Secale cerealeEucalyptus grandis20.2713.4382.24107forward
CNT30286106Secale cerealeTriticum aestivum48.6785.179.38257forward
CNT30553532Secale cerealeOryza glaberrima20.2714.185.05107forward
CNT30364646Secale cerealeSorghum bicolor22.7310.9385.83120forward
CNT30100237Secale cerealeOryza rufipogon60.6120.0679.69320forward
CNT30592972Secale cerealeEragrostis curvula22.7333.0685120forward

Expression of CNT30177347

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MSFVIRVFLATLVTQFLTAFLTFSSRWRRSMAWHNATKNVEDMSFRMSMAS

>peptide 2 (45 aa)
FSPVKYTVLSSSRTNRYRGYDRQSTIRFGSAAVPFSTAPLAASTS*

>peptide 3 (39 aa)
SLQSSTLSLAPRARTGTEGMTDSQQYGSVQQQCHSPLHL*

Sequence

>CNT30177347
CTTCTCTCCAGTCAAGTACACTGTCCTTAGCTCCTCGCGCACGAACCGGTACAGAGGGTATGACCGACAGTCAACAATACGGTTCGGTTCAGCAGCAGTG
CCATTCTCCACTGCACCTCTAGCAGCGTCGACCTCCTGAGGCAGTGACGAGCAGAGCTCCTGCTCGAATGTAACAACCTTGGCGAACACTGAGGTTTCCA
TGTTGCGCTCAGCCTCGCCGTTGGCCAGGGCGTGCTCCACCAGCACCGCGCGCATCTTCTTCATGAGAGGGTAGTTGGCGCTACAAGGGTCATCTGCGTA
CGCGAACACAGCCTCGCGGTCGATTGTCTGGAGCAAGTCCTTCTCACAAAAACGAGCATTGTGGAGGCCACCCATGTCATTTGTGATCAGGGTCTTCCTA
GCCACTCTTGTGACACAATTCTTGACGGCGTTCTTGACATTCTCTTCAAGGTGGCGCAGGTCGATGGCTTGGCACAACGCAACCAAAAATGTAGAGGACA
TGAGCTTCAGAATGTCGATGGCCTCCGC