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Detailed information on CNT30533207


BLAST search results

BLAST vs Swiss-Prot:
sp|P45735|PALY_VITVI, E-value = 8e-140

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177347Eucalyptus grandisSecale cereale13.4320.2782.24107forward
CNT30576230Eucalyptus grandisOryza barthii6.920.6890.9155forward

Expression of CNT30533207

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MGSGAPSQSLKHSSKGSISLPSHMAENTRSKSSPGEPTFSPVSKPVPSSSLTNLYNGYDLHPLILLAIAEFPLSN*

>peptide 2 (54 aa)
MRQSSGFGKVSNRWEAEHHPSPSSTPAKDRSACPRTWRRTPDQSPRPASRPSPP*

>peptide 3 (55 aa)
MAWHRATRKVEDMSFSTSTASAVFLDEIRPKEFTSWLCCSALSTWLVTGLARNCSS

>peptide 4 (37 aa)
MEVLGFISRSTSSSASSTRTCLSFCIRGYVALQGSSM*

Sequence

>CNT30533207
GGGCAAGTTAAATTATGAGGCAGTCTTCAGGATTTGGAAAAGTTTCTAACAGATGGGAAGCGGAGCACCATCCCAGTCCCTCAAGCACTCCAGCAAAGGA
TCGATCAGCTTGCCCTCGCACATGGCGGAGAACACCAGATCAAAGTCCTCGCCCGGCGAGCCGACCTTCTCCCCCGTGAGCAAACCGGTCCCGAGCTCTT
CCCTCACGAACCTGTACAATGGGTACGACCTGCACCCCCTGATCTTGTTAGCGATCGCCGAGTTCCCGCTCTCGAACTGAGCTCTCGCGTTCTCGACCTC
CTTCGGGAGGAGTGCCTTGAGCTCCTCCTCGAAAGTCCCAATCTTCTGGAAGATGGAGGTGCTGGGGTTCATCTCCCGGTCGACGTCGTCCAGCGCATCG
TCCACGAGGACCTGCCTCAGCTTCTGCATCAGGGGGTACGTGGCGCTGCAGGGGTCATCGATGTAGGCGAAGACGTACTCCCGGTCGACCACCTTGATCA
GGTCTTTCTCGCTGAACCGCGACGGGTGGAGCTCGCCGTTGGACCCAACGTAGAGGACCTTCTTGGCCACTTGGTTCACCGTGTTCTTGACCACGCTCTT
GAGGTTCTCTTCCAGGTGCCTCAGGTCGATGGCCTGGCACAGGGCGACCAGGAAGGTGGAGGACATGAGCTTCAGCACGTCGACGGCCTCGGCAGTCTTC
CTCGACGAGATCAGGCCCAAGGAGTTCACGTCCTGGTTGTGTTGCTCCGCGCTCTCGACATGGTTGGTCACAGGGTTGGCAAGGAACTGCAGCTCCG