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Detailed information on CNT30434240


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SCM3|RS24_ARATH, E-value = 7e-111

BLAST vs NONCODE:
NONPOPT001715, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372448Papaver somniferumArabidopsis thaliana19.9235.0789.68155forward
CNT30708364Papaver somniferumGlycine max36.1263.8680.78281forward
CNT30157936Papaver somniferumPistacia vera52.9619.5780.58412forward
CNT3075029Papaver somniferumBrassica juncea16.233.1682.54126forward
CNT30261364Papaver somniferumBrassica rapa16.221.8880.95126forward

Expression of CNT30434240

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MWFTNLVTPVTSSNRYNRQLSKNNPATNSSSNFFTALHSQTNMTISITNNNKSLESGPLSSTSLLLNRHDFHHFIFQYWS*

>peptide 2 (69 aa)
LTKFPRVLVDPRDEVKTSSIPANCKTFLGTLAATIPAPRGAGTILTVTEPHFPVTLQGTVCGLPILLPQ*

Sequence

>CNT30434240
CCTTGACAAAGTTTCCAAGGGTTTTGGTAGATCCCCGAGATGAAGTGAAAACATCATCAATACCAGCAAACTGCAAAACCTTCTTAGGAACTCTAGCAGC
AACGATACCAGCACCACGAGGAGCAGGAACCATTCTCACAGTAACAGAACCACATTTCCCAGTAACCTTACAAGGTACAGTATGTGGTTTACCAATCTTG
TTACCCCAGTAACCTCTTCTAACAGGTACAACAGACAACTTAGCAAGAATAATCCCGCCACGAATAGCAGTAGCAACTTCTTTACTGCACTTCACTCCCA
AACCAACATGACCATTAGTATCACCAACAACAACAAAAGCCTTGAATCTGGTCCTCTGTCCAGCACGAGTTTGCTTCTGAACAGGCATGATTTTCATCAC
TTCATCTTTCAATACTGGTCCTAAGAGAGTATCAACGATTTGGTAAATCTGTTCAAGACTTCTGATCTGTCCGTCTTTCACAAGACGGCCGAGTTTGGTG
ACTGGAACCCATTTCTCTTCTTCTTCACGACGGCCGCCGCCTCTTCTTCCACCACGACGATCTCCTCTTCCTCTGTCACCTCTGCCGCCGCGATCTCCAC
GACCTCCAAAACCTCCTCCGAATCCACCTCTATCTCCTGCACCACGTTCCGCCATGATTGGTTGATGTGAAAGGTGTTTCTCTCTTTCACTCACTCTCTG
GTTTTAGGGATGAAGTTTTGAGAGAGGCTCTCGATTTGAAGCAGCTCTTATATACAGAAACCCTAGTAGGTTTACAAA