« Back to Brachypodium distachyon search


Detailed information on CNT30151616


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179441Brachypodium distachyonSecale cereale26.3420.7195.93123forward
CNT30385831Brachypodium distachyonTriticum turgidum26.3419.7795.93123forward
CNT30436234Brachypodium distachyonAegilops tauschii28.4839.9487.97133reverse complement
CNT30658121Brachypodium distachyonTriticum dicoccoides11.1324.5394.2352forward
CNT30680235Brachypodium distachyonTriticum urartu26.3436.9495.93123forward
CNT30370159Brachypodium distachyonOryza glumipatula12.8520.3493.3360forward
CNT30108236Brachypodium distachyonOryza longistaminata33.8318.2983.54158forward

Expression of CNT30151616

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IVSQNISFKNIHFSSNIVEIIIFALQNALW*

>peptide 2 (44 aa)
MLDRSTSREARASTSLLADILRTNFKTRRRSSDAYTNLPPLRTK*

Sequence

>CNT30151616
CTATAGTGTCCCAGAATATCAGTTTCAAAAACATACATTTCAGTAGCAACATAGTAGAAATAATTATTTTTGCACTGCAAAATGCACTTTGGTAGACAAC
AGGATCTTCACTGTGACAATAGTCGTTAAGTAAAACTTCTAGCCACATCGAAAACAAAATAACAGCGCAACAGGGATTCACCCCTGTGGAGAACATGTGT
TTTGGTAGGTACTAGTATTAGGCTCTTAGCCTATCAGCAGCTTGTTCTCCTCCAAGAAACTGTATGTAGGAACCTCCAGGTTCGATGCTGGATAGATCAA
CCTCAAGGGAAGCAAGGGCAAGCACATCCTTACTTGCCGACATACTCAGGACAAACTTCAAGACAAGGAGACGCAGCAGTGATGCATATACAAATCTCCC
ACCACTCAGAACAAAGTAGGCAAAAGCACGCTTGCTGGGATCCCCAGGAGGATATCTCTCATGGTTG