Detailed information on CNT30179441


BLAST search results

BLAST vs Swiss-Prot:
sp|P49727|UCRI_MAIZE, E-value = 1e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30385831Secale cerealeTriticum turgidum98.9994.5398.47588forward
CNT30436234Secale cerealeAegilops tauschii55.5699.198.18330reverse complement
CNT30658121Secale cerealeTriticum dicoccoides25.7672.1799.35153forward
CNT30680235Secale cerealeTriticum urartu56.0610098.5333forward
CNT30151616Secale cerealeBrachypodium distachyon20.7126.3495.93123forward

Expression of CNT30179441

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MSILLSSKKLYVGTSRQTSRQGDAAVMHIRISHHSAQSRQRHACWDLQEDISHGCTGHKGFLSWGSSVQQQWLGVQPTQHLGSVEQVFQ

>peptide 2 (49 aa)
MLVGTGFRLLAYEHLVIFQETVRGHLKTNFKTRRRSSDAYTNLPPLSTK*

Sequence

>CNT30179441
CTCAACGTTATAGACACAAACGATGAAGAATAGTATGTTTGCTTATTTATCAAATATATAGGTAGCAAGGACCAGAAGAGGTATACAATATCCTTCCGAT
AGGGTCTCAGAAAATCAGTACAAAACAACTTACAATCCAGTAGCAACATAGGAGAAACAATTATTTCGCACTGCAAATGAACTTCAGTAGGTAACAGTGG
ATCACCGTTGCAATAGTCCTGAAACAAAAACTCCTAGCCACATTGAAAACAAAATAACAGCGCAACAGGAATTCACTCCTGTGGAGAATATATGTTGGTA
GGTACTGGTTTTAGGCTCTTAGCCTATGAGCATCTTGTTATCTTCCAAGAAACTGTACGTGGGCACCTCAAGACAAACTTCAAGACAAGGAGACGCAGCA
GTGATGCATATACGAATCTCCCACCACTCAGCACAAAGTAGGCAAAGGCACGCTTGCTGGGATCTCCAGGAGGATATCTCTCATGGTTGTACTGGTCATA
AAGGATTTTTGAGTTGGGGTTCTTCAGTGCAGCAACAGTGGCTGGGAGTTCAGCCAACCCAGCATCTTGGTTCCGTGGAACAAGTGTTTCAGCC