Detailed information on CNT30680235


BLAST search results

BLAST vs Swiss-Prot:
sp|P49727|UCRI_MAIZE, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179441Triticum urartuSecale cereale10056.0698.5333forward
CNT30385831Triticum urartuTriticum turgidum10053.54100333forward
CNT30108236Triticum urartuOryza longistaminata23.128.9185.7177forward
CNT30151616Triticum urartuBrachypodium distachyon36.9426.3495.93123forward

Expression of CNT30680235

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSVGTGFRLLAYEHLVIFQETVGGHLKTNFKTRRRSSDAYTNLPPLRTK*

>peptide 2 (54 aa)
MHIRISHHSEQSRQRHACWDLQEDIFHGCTGHKGFLSWGSSVQQQWLGVQPTQHL

Sequence

>CNT30680235
GCCACATTGAAAACAAAATAACAGCGCAACAGGAATTCACTCCTGTCGAGAATATATGTCGGTAGGTACTGGTTTTAGGCTCTTAGCCTATGAGCATCTT
GTTATCTTCCAAGAAACTGTAGGTGGGCACCTCAAGACAAACTTCAAGACAAGGAGACGCAGCAGTGATGCATATACGAATCTCCCACCACTCAGAACAA
AGTAGGCAAAGGCACGCTTGCTGGGATCTCCAGGAGGATATCTTTCATGGTTGTACTGGTCATAAAGGATTTTTGAGTTGGGGTTCTTCAGTGCAGCAAC
AGTGGCTGGGAGTTCAGCCAACCCAGCATCTTG