Detailed information on CNT30519659


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN0|NHL1_ARATH, E-value = 5e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30461908Setaria italicaSaccharum spontaneum61.4138.7287.89479forward
CNT30132292Setaria italicaLolium perenne22.055086.63172forward
CNT30595730Setaria italicaOryza meridionalis38.5939.9290.37301forward
CNT30109084Setaria italicaOryza longistaminata38.5927.4485.38301forward
CNT30584447Setaria italicaEchinochloa crusgalli25.7724.0487.06201forward
CNT30116075Setaria italicaOryza nivara34.8726.888.97272forward

Expression of CNT30519659

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRPSTLTCSATNPAATSCFMASATYPATGTDWADRTGDQTVTSRWPWYCGGSETGTVTGSSR*

>peptide 2 (48 aa)
MRTSARRHDAMHPQQRRRWCSWRWCLPSLLMADQWSRPRSALLSPLLR*

>peptide 3 (70 aa)
VIINDVSRRKLITALPEYPRATTFTGQPAYTSTLHPVGCANLSADSVALAPPPKPGKPAESTAGQLTKRW*

Sequence

>CNT30519659
GCGTAATAATTAACGATGTATCCCGAAGAAAACTAATTACCGCTTTGCCAGAGTACCCGCGCGCTACTACATTCACCGGCCAACCGGCCTACACCTCGAC
GCTGCATCCCGTGGGCTGCGCGAACTTGAGCGCCGACAGCGTGGCATTGGCGCCGCCGCCGAAGCCGGGGAAGCCCGCGGAGAGCACGGCGGGGCAGCTG
ACGAAGAGGTGGTAGCTCCCGGACACCCAGCTTCCGACCTTCCACTTGATGCGGCCGTCGACCTTGACCTGCAGCGCGACGAACCCGGCGGCGACGTCCT
GCTTCATGGCGTCGGCGACGTACCCGGCGACGGGCACGGACTGGGCCGACAGGACCGGCGACCAGACGGTGACGTCGCGGTGGCCCTGGTACTGCGGCGG
CAGCGAGACGGGGACCGTGACGGGCTCGTCGCGGTAGGTGACGAAGACGTCGAGGCGGCGGTAGAGGACGCCGACGTGGTCGTTGGGGTTGCGGGAGGCC
AGCGTCACCTGCGCCGACGCCGAGAGGGACGGGTCGCCCACGGTGATGGGGCGGCGGAGCTGCAGGGGCGGAGCGCGAGGTAGACGACGAGCGCGACGAA
GGCCACGATGAGGACCAGCGCCAGGAGGCACGACGCCATGCACCCGCAGCAGCGCCGCAGGTGGTGCTCGTGGCGGTGGTGCTTGCCCTCCTTGCTCATG
GCTGATCAGTGGTCACGACCGCGCTCTGCTCTGCTCTCTCCCCTGCTCCGGTGAGCTGTGGGTGTGCCTGGAGCTCTGAG