Detailed information on CNT30103387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695897Oryza rufipogonOryza sativa46.4673.39100433forward
CNT30396539Oryza rufipogonTriticum turgidum9.8724.1597.8392forward
CNT30554906Oryza rufipogonOryza glaberrima31.3350.5299.66292forward
CNT30596905Oryza rufipogonOryza meridionalis36.4855.9292.94340forward
CNT30577582Oryza rufipogonOryza barthii39.5958.0299.73369forward
CNT30117527Oryza rufipogonOryza nivara31.1250.35100290forward

Expression of CNT30103387

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKQQLQEKRLGYYDELKNMALIESLSNRVASHRLA*

>peptide 2 (94 aa)
MNMGISAVPPPKSQREITNSVLAMADGSNQVANTENRTVKIQIGSKSETARALEISKSLKTNWAIQVNQCHQLEQCRLQNVHIARQEIATEFRG*

>peptide 3 (39 aa)
MAVTVLRRACSVXPEPLAALASPRHRRRRRSPPVARKKL*

>peptide 4 (34 aa)
MGPLSKLNFKPPSNNLKLSLGVPKFKLQNPSGKS*

>peptide 5 (30 aa)
MVPNFRSRALNLDPASTTLQNTSSPQEIPT*

Sequence

>CNT30103387
CCCCTTTGAATAATTTTGAAAATAATGGGTCCTCTTTCGAAATTAAATTTTAAACCACCTTCAAATAATCTGAAACTGAGTTTAGGTGTTCCAAAATTCA
AACTCCAAAACCCAAGCGGGAAATCATAAATTTAGCGCTCGGGATGGTTCCAAATTTCCGATCGCGCGCACTGAATTTGGACCCCGCGTCAACCACATTG
CAAAATACCTCATCACCTCAGGAGATTCCTACATGAATATGGGCATTTCCGCGGTTCCGCCCCCCAAATCGCAGCGGGAAATCACAAATTCAGTGCTCGC
GATGGCCGATGGTTCGAATCAGGTAGCCAATACTGAAAATCGGACCGTGAAAATCCAAATAGGGAGCAAATCAGAAACTGCTCGTGCTCTTGAAATTTCA
AAATCGCTCAAAACAAATTGGGCAATACAGGTCAACCAGTGTCACCAACTAGAACAATGCAGGTTGCAAAACGTTCACATAGCACGGCAAGAGATTGCAA
CTGAATTTAGAGGGTAAATCACTGCAGATTTCCTATTCCATTCGAACGAACGAACCAGTAGTTCATACATCCCTAATTAATGAAGGAACAGGAGACGAGA
TGAAACAACAGCTACAGGAGAAGAGGCTAGGCTACTACGACGAACTGAAGAACATGGCACTAATCGAATCCCTATCCAATCGCGTGGCCTCGCATCGCCT
CGCCTAGCCGCCGAATCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCCGTGNTT
CCCGAGCCCCTTGCCGCCCTTGCCTCTCCCAGACATCGCCGCCGCCGCCGCTCGCCGCCGGTCGCGAGGAAGAAACTTTGACTTGGTGAGAAGTGGTCGG
CGGCGGTGGTGATGAGGTGGGGAGGAGGCGTG