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Detailed information on CNT30396539


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30441074Triticum turgidumAegilops tauschii55.9185.292.02213forward
CNT30250699Triticum turgidumAvena sativa55.3848.8491211forward
CNT3014450Triticum turgidumZea mays55.1242.691.9210forward
CNT30686111Triticum turgidumTriticum urartu42.7865.9990.18163forward
CNT30596928Triticum turgidumOryza meridionalis25.982096.9799forward
CNT30103387Triticum turgidumOryza rufipogon24.159.8797.8392forward

Expression of CNT30396539

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RRDATITPKTMNTEQPWLATNLAARRGYEWTGAA*

>peptide 2 (57 aa)
MAGLVMPWMLSRRTFRWRLAPPLPSPFPPLPRPDIFDLRRASLGCCVCVAGGGRRCGE

Sequence

>CNT30396539
CGGCGAGATGCGACCATTACACCCAAGACCATGAACACTGAACAACCATGGCTAGCTACTAATCTGGCGGCGCGACGTGGATATGAGTGGACCGGCGCGG
CCTAGCCGCCGAATCCGTAGAGGGTGCGGCCCTGGCGCTTGAGGGCGTAGACAACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGCC
GACGGATGGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGAACCTTCCGGTGGCGCTTGGCGCCACCCTTGCCCAGCCCCTTCCCGCCCTTGCCGCG
GCCCGACATCTTCGATCTGCGGCGAGCTTCGCTTGGCTGCTGTGTGTGTGTTGCTGGTGGTGGTCGGCGGTGTGGCGAGAT