Detailed information on CNT30117527


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 7e-40

BLAST vs NONCODE:
NONGMAT001327, E-value = 1e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695897Oryza nivaraOryza sativa78.1276.2797.78450forward
CNT30670612Oryza nivaraSetaria viridis35.075098.51202forward
CNT30522839Oryza nivaraSetaria italica37.6737.0997.7217forward
CNT30375418Oryza nivaraArabidopsis thaliana11.1127.1287.564forward
CNT30286361Oryza nivaraTriticum aestivum39.4141.596.04227forward
CNT30220695Oryza nivaraHordeum vulgare27.4336.2498.1158forward
CNT30387206Oryza nivaraTriticum turgidum38.3739.6195.93221forward
CNT30565712Oryza nivaraActinidia chinensis33.6864.8887.63194forward
CNT30554906Oryza nivaraOryza glaberrima77.677.3499.78447forward
CNT30434672Oryza nivaraAegilops tauschii39.4151.8396.04227forward
CNT30239976Oryza nivaraAvena sativa39.0644.6496.89225forward
CNT30664872Oryza nivaraTriticum dicoccoides38.7247.4594.17223forward
CNT30143346Oryza nivaraLolium perenne38.0237.5692.69219forward
CNT3015042Oryza nivaraZea mays38.7237.6796.86223forward
CNT30229571Oryza nivaraAnanas comosus36.8151.4693.87212forward
CNT30685043Oryza nivaraTriticum urartu38.7250.1195.52223forward
CNT30620798Oryza nivaraCajanus cajan34.237.7482.23197forward
CNT30596905Oryza nivaraOryza meridionalis77.4373.3697.09446forward
CNT30370989Oryza nivaraOryza glumipatula29.1726.88100168forward
CNT30148852Oryza nivaraBrachypodium distachyon38.1949.5593.64220forward
CNT30103387Oryza nivaraOryza rufipogon50.3531.12100290forward
CNT30577582Oryza nivaraOryza barthii77.670.28100447forward
CNT30581397Oryza nivaraEchinochloa crusgalli38.5437.8298.2222forward

Expression of CNT30117527

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRFTPPLLASLRIAGFVIPWMLSRSTFLCLFAPPFPSPLPPLPLPDIAAAAARRRSRGRNFDLVRSGWRRW*

>peptide 2 (73 aa)
GKRLQLNLEGKSLQISYSIRTNEPVVHTSLINEGTGDEMKQQLQEKRLGYYDELKNMALIESLSNRVASHRLA*

Sequence

>CNT30117527
CGGCAAGAGATTGCAACTGAATTTAGAGGGTAAATCACTGCAGATTTCCTATTCCATTCGAACGAACGAACCAGTAGTTCATACATCCCTAATTAATGAA
GGAACAGGAGACGAGATGAAACAACAGCTACAGGAGAAGAGGCTAGGCTACTACGACGAACTGAAGAACATGGCACTAATCGAATCCCTATCCAATCGCG
TGGCCTCGCATCGCCTCGCCTAGCCGCCGAATCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGGAT
GACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCC
GGCTTCGTGATCCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGCCTCTTCGCGCCGCCCTTCCCGAGCCCCTTGCCGCCCTTGCCTCTCCCAGACATCG
CCGCCGCCGCCGCTCGCCGCCGGTCGCGAGGAAGAAACTTTGACTTGGTGAGAAGTGGTTGGCGGCGGTGGTGATG