Detailed information on CNT30554906


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 7e-40

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695897Oryza glaberrimaOryza sativa78.276.6197.35452forward
CNT30670612Oryza glaberrimaSetaria viridis34.955098.02202forward
CNT30220695Oryza glaberrimaHordeum vulgare27.3436.2497.47158forward
CNT30565712Oryza glaberrimaActinidia chinensis33.5664.8887.63194forward
CNT30229571Oryza glaberrimaAnanas comosus36.6851.4693.87212forward
CNT30685043Oryza glaberrimaTriticum urartu38.5850.1195.07223forward
CNT30596905Oryza glaberrimaOryza meridionalis78.274.3496.68452forward
CNT30370989Oryza glaberrimaOryza glumipatula29.0726.8899.4168forward
CNT30325970Oryza glaberrimaAsparagus officinalis23.719.8685.4137forward
CNT30103387Oryza glaberrimaOryza rufipogon50.5231.3399.66292forward
CNT30577582Oryza glaberrimaOryza barthii78.271.0799.78452forward
CNT30581397Oryza glaberrimaEchinochloa crusgalli38.4137.8297.75222forward
CNT30117527Oryza glaberrimaOryza nivara77.3477.699.78447forward

Expression of CNT30554906

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRFTPPLLASLRIAGFVIPWMLSRSTFLCLFAPPFPSPLPPLPLPDIAAAAARRRSRGRNFDLVRSGWRRW*

>peptide 2 (74 aa)
HDKRLQLNLEGKSLQISYSIRTNEPVVHTSLINEGTGDEMKQQLQEKRLGYYDELKNMALIESLSNRVASHRLA*

Sequence

>CNT30554906
CACGACAAGAGATTGCAACTGAATTTAGAGGGTAAATCACTGCAGATTTCCTATTCCATTCGAACGAACGAACCAGTAGTTCATACATCCCTAATTAATG
AAGGAACAGGAGACGAGATGAAACAACAGCTACAGGAGAAGAGGCTAGGCTACTACGACGAACTGAAGAACATGGCACTAATCGAATCCCTATCCAATCG
CGTGGCCTCGCATCGCCTCGCCTAGCCGCCGAATCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGG
ATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGTGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCG
CCGGCTTCGTGATCCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGCCTCTTCGCGCCGCCCTTCCCGAGCCCCTTGCCGCCCTTGCCTCTCCCAGACAT
CGCCGCCGCCGCCGCTCGCCGCCGGTCGCGAGGAAGAAACTTTGACTTGGTGAGAAGTGGTTGGCGGCGGTGGTGATG